Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1727 ATGAGCCCCAAAAAGCCTCACAAAAATGCTCCTAAATTAAAGCCTCCATTGAGAATGGGTGAAGTGAAGCTGTATGGGCACTGGTCGAGTCCTTTCGTTTATAGAGTCATTTGGGCTCTGTCCATCAAAGGGATACCCTACGAATATGTAGAAGAAGATCTCTACAACAAAAGTCCTTCACTCCTTCACTACAACCCCATCTACAAGAAGGTCCCCGTGCTCGTCCATGGCGGAAAATCCATATGCGAGTCCGCCGTCATCCTCGAATACATCGATGAGGCATGGTCTCAGAATCCCCTGCTCCCCACCGATCCCCTCGACCGAGCTACCGCTCGACTTTGGATTCGACTCTGCGAAGATGTGGGGCTGGCGACATGGAGAATGTTTACTTCCAAAGGGGAAGATCGCAAGAAGGCAAAGCAAGAGAGCCTGGAGATGCTGCAAATCGTGGAAGAGAAAGGGATCGGCGAGGGAAAGATCTTCGGCGGGGAGAAGATTGGGATTCTGGATTTGGTGTACGGAGTATTTGGAGAATGGCTGGGAGTGATGGAAGAGGTGATCAGCGAGAAATTGATCGAAGCCAATTCGTTTCCTCGGCTGCACGCTTGGCTCGGAGCTTTCTTGGAATCTCCGACGATTAAAGAGAATCGCCCCGATCGAGATCAGATGGTGGTCAATTTCAAGGGCTTGAGAGAGAAGCTTCTGCAATCCGCGTCGAAGTAA 723 50.21 MSPKKPHKNAPKLKPPLRMGEVKLYGHWSSPFVYRVIWALSIKGIPYEYVEEDLYNKSPSLLHYNPIYKKVPVLVHGGKSICESAVILEYIDEAWSQNPLLPTDPLDRATARLWIRLCEDVGLATWRMFTSKGEDRKKAKQESLEMLQIVEEKGIGEGKIFGGEKIGILDLVYGVFGEWLGVMEEVISEKLIEANSFPRLHAWLGAFLESPTIKENRPDRDQMVVNFKGLREKLLQSASK 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41123457 41125398 - Maker00031438 Lcy11g1727 647628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1727 240 CDD GST_C_Tau 105 230 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Lcy11g1727 240 Gene3D - 104 238 - -
Lcy11g1727 240 SUPERFAMILY Thioredoxin-like 22 120 IPR036249 -
Lcy11g1727 240 FunFam Tau class glutathione S-transferase 101 237 - -
Lcy11g1727 240 FunFam Tau class glutathione S-transferase 17 103 - -
Lcy11g1727 240 SFLD Main.3: Omega- and Tau-like 19 238 IPR045073 -
Lcy11g1727 240 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 104 227 IPR010987 -
Lcy11g1727 240 SUPERFAMILY GST C-terminal domain-like 93 233 IPR036282 -
Lcy11g1727 240 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 21 227 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Lcy11g1727 240 Gene3D Glutaredoxin 18 103 - -
Lcy11g1727 240 CDD GST_N_Tau 22 95 - -
Lcy11g1727 240 SFLD Glutathione Transferase (cytosolic) 19 238 IPR040079 -
Lcy11g1727 240 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 20 99 IPR004045 -
Lcy11g1727 240 Pfam Glutathione S-transferase, N-terminal domain 21 93 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1727 K00799 - - rcu:8265677 268.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1727 Lcy-Chr11:41123457 Lcy11g1734 Lcy-Chr11:41151335 4.02E-87 dispersed
Lcy11g1726 Lcy-Chr11:41114717 Lcy11g1727 Lcy-Chr11:41123457 1.85E-49 tandem
Lcy11g1727 Lcy-Chr11:41123457 Lcy11g1728 Lcy-Chr11:41126607 1.54E-105 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g815 . . . . . . . . . . Cma06g01278 . . . Sed02g1457 . . Bhi01g00088 Tan10g0596 Cmetu06g2009 . Hepe05g1844 . Lcy11g1727 . . . . . . . . . . . Lsi05g01791 . . Cme06g00432 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01147 Chy06g00411 .
Vvi15g85 . . . . . . . . . . Cma06g01277 . . . Sed02g1457 . . Bhi01g00088 Tan10g0596 Cmetu06g2009 . Hepe05g1844 . Lcy11g1727 Cla05g00265 Cam05g0289 Cec05g0289 Cco05g0297 Clacu05g0286 Cmu05g0272 Cre05g0336 . . . . Lsi05g01929 . . Cme06g00291 . . . . . . . . . Cmo06g01186 . . . . . . . . . . . . . . . . . . . . . . Csa03g00999 Chy06g00270 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120