Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1745 ATGGCAATGGCGGAATCTGGAGGATGGATTCGGTTGTTTCTTCTCGTGGTGTTCATGTTGTTCTTCGTCGGAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGTATGAATCTCTCTCTATCTCTCTAGAATTCGCGGAGTTTCTGTTTTCCGCTGAATTTACGTTATGGAATGGGGCAACTGAGGTGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGACGAGGTTGAGGCTCCCGGTAATAAGCATGCCGTTGACAACCCAGAAGAGATCGCTGCAATGGTTGACCTGAGTATCCGCAATGCCACTGCGAGGAGAGAGCTTGGTTTCTTCTCATGTGGAACCGGCAATCCTATTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAGAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGCGGTCGCGATGGTCGATTCTACGTCATCACTGATTCTGGTGATGACGACCCTGTCAACCCAAGGCCAGGCACTTTGCGCCATGCCGTCATCCAGGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTCAAACAGGAGCTGATCATGAATAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCCTCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTTAACATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGCTCTCCCAATCACGTTGGGTGGAGAACAATGGCTGATGGGGATGCCATTTCCATTTTCGGGTCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTCGATGCTGTCATGGGATCCACTGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTATCTTCACTTCATCCATCTACTCAGTTCGTATTTTTGCCATTTTTCAGAGACATTGCATCACGTTGTGTGTTTAATGAACAGGTAATGTTATTGGGACATAGTGATTCCTACGTTAGAGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGGCACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCTAATCCAACCATCAACAGCCAGGGTAACAGATATGCTGCTCCGACCAACCCTTTTGCAAAAGAGGTGACCAAGAGGGTTGAGACAGCTGAATCTCAGTGGAAAAACTGGAACTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCGGCAAGCTATGCCAGAGCCTCAAGTTTGGGAGCTAAATCCTCATCCATGGTTGCTTCCATAACATCCAGCGCCGGTGCGCTTTCCTGCCGGAGAGGCCATCCCTGCTAG 1497 47.83 MAMAESGGWIRLFLLVVFMLFFVGTIARVPKEIPEIEYESLSISLEFAEFLFSAEFTLWNGATEVLQSSSNSSMAVRLDEVEAPGNKHAVDNPEEIAAMVDLSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVITDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACLTIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVSSLHPSTQFVFLPFFRDIASRCVFNEQVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESQWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVASITSSAGALSCRRGHPC 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41250075 41254831 - Maker00031439 Lcy11g1745 647646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1745 498 Gene3D - 121 491 IPR012334 -
Lcy11g1745 498 Pfam Pectate lyase 207 317 IPR002022 -
Lcy11g1745 498 Pfam Pectate lyase 341 413 IPR002022 -
Lcy11g1745 498 PRINTS Pollen allergen Amb family signature 144 161 IPR018082 -
Lcy11g1745 498 PRINTS Pollen allergen Amb family signature 204 220 IPR018082 -
Lcy11g1745 498 PRINTS Pollen allergen Amb family signature 168 193 IPR018082 -
Lcy11g1745 498 PRINTS Pollen allergen Amb family signature 268 289 IPR018082 -
Lcy11g1745 498 SUPERFAMILY Pectin lyase-like 98 493 IPR011050 -
Lcy11g1745 498 SMART amb_all 196 421 IPR002022 -
Lcy11g1745 498 PANTHER PECTATE LYASE 18-RELATED 25 495 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1745 Lcy-Chr11:41250075 Lcy13g1730 Lcy-Chr13:36269656 2.13E-213 dispersed
Lcy5g2168 Lcy-Chr5:44640219 Lcy11g1745 Lcy-Chr11:41250075 6.69E-213 transposed
Lcy11g1745 Lcy-Chr11:41250075 Lcy12g2053 Lcy-Chr12:41846793 6.47E-253 wgd
Lcy11g1745 Lcy-Chr11:41250075 Lcy13g0445 Lcy-Chr13:5232370 4.52E-258 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1745 K01728 - csv:101218188 811.986