Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1767 ATGGAGTCAGTGAATTTGAGGACGAGATATTTGATCAATAAAGATCTTACTTTCAGGACTTCAGAGATTGGTAATGCCGGCGTTGATCTGTCTCTTTGGAGTTTTTTGAGGCTGATTCGAAAGATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTCGATGTGTACATTTATGATTACTTGGTGAAGAAAAAATTACATGCCACGGCTAAGTCCTTCATGAATGAAGGAAAGGTCGCTCCAGATCCAGTAGATTTTCCTTCAGCTTATATTTTATCATACATCTTAACTGCTTTGAGTGTGATTGAGAAGGTTACTAAGGTCACTCGAGTTGAGTGTAAAGGAGAGGAGAGTGTTCATATTGGAACTAGATTACTGTCAATTGATGCTCCTGGAGGATTTTTGTTTGAATGGTGGTCTGTATTCTGGGACATATTTATAGCAAGGACAAATGAGAAACATTCGGAACCTGCTGCAGCATATATAGAGGCACAACAAATTAAAACGAAAGAACAACAACAACTGCAGATGCAACAACTGCACCTTATGCGTCAAGCTCAGTTACAACGAAGGGATGGTTCTCACCCTTCGCTTGGTGGTTCACTGAATGCTGTTAATTCTGAAGGAATGCTGGGGCAACCAACAGCAAGTGCACTAGCAGCAAGAATGTACGAAGAACGCATGAAAAACCCCAATGCAATAGATTCAGAAACATCCCAACCACTGCTTGATGCGAGGATGGCCCTTGTGAAACCAGCTACAAATCATCCAGGACAGTTAGGAAACTCTGGTAGTGTGAATGCAGCATTGCAGCAAATCCAGGCTCGAGGTCAGCAGCCCACGGATATTAAACCAGAGGTCAATATTGGTGGTACTCAGAGGTCATTACCTATGGATCCATCTTCAGTTTATGGGCCAGGGTTAATGCAGTCAAAACCTGGAATAGGAAACACAGGATTGAACCCGGGTGGTCTACCATTGAAGGGGTGGCCTTTAGCAGGTCTTGAGCAAATTAGGCCAGGTTTAGGCGCACAGGTTCAAAAACCTTTCCTTCAAAGTGCTAATCAATTTCAGCTCTTACCGCAGCAGCAGCAGCAACTCTTGGCACAGGTCCAAGCACAAGGCAATCTTGGTAGTTCGCCTATGTACCATGACATGGATCCTCAAAGATTTAGAGGATTACAAAGGAGTAACTTAAATACAAAAGACGGCCAACTAATTGCAAATGATGGATCAATTGGCTCACCCACCATGCAGTCAACGTCATCGAAGGTAAGTTTTCCCTCTGGAAGTGCACAGATGAATATTCCACAAATGCAACAGTCTTCTTCTCAACAGCAGGATGGCTTACATCCTCAGCAAGTACAACAGAACCGAAAAAGGAAGGGTCCTTCATCATCTGGAGCCGCTAACAGTACCGGAACAGGGAATACCATTGGACCTAACTCCCAACCATCAACTCCATCAACTCACGCCCCTGGTGATGGAGCTGTTATTGCCCCTAATATGCAGAATGTTAATAGCATGCAAAAGGGTTTAATGTTGTATGGGAATGATGGAACAGGCGGTCTTGCATCATCCACAAACCAGCTGGAAGACATGGAACATCTTGGAGATATTGGCTCCTTAGATGATAATGTGGAATCGTTTCTCTCGCATGATGACGGGGATGGAAGGGATTTGTTTGGCACGTTGAAACGGAACCCTTCTGAGCATGCTGCAGAAAATTCAAAGGGTCCTTCTTTTAGTGAAGTTGGTTCCATGCGTAAAAGCAACAGCAAAGTTGTGTGCTGTCATTTCTCTTCGGATGGAAAGTTATTGGCAAGTGCCGGTCATGACAAAAGGGTGGTTATCTGGAACATGGAGAACTTGGAAACTGAAATCACACCAGAGGAACACACTCTTATCATTACTGATGTTCGTTTCAGACCCAATTCAACTCAGCTAGCAACATCTTCCTTTGATACAACTATTCGACTTTGGGATGCAGCACAACCAACTTATAGTCTACATGCATATACTGGACATGCCTCACAAGTGGCATCTCTCGATTTCCACCCTAAAAAGAATGAGATTTTCTGCTCTTGTGATGCAAACAATGAGATTCGCTATTGGCACGTCAGTCAGGGCTCTACCCACGTCTCCAAGGCTAGTCCAATGATTCTTTATCTATTTTGTTCTTTCAAATTCCCAGGTGGCTCTGGCTCGACTCAGGTGAGATTTCAGCCAAGAATAGGGCAACTTCTGGCTGCAGCATCAGATAGCGTGGTTTCTATCATTGATTTCGAGTCAGACAGGCTAACACTCTCATTAAAGGGTCACTCATCAGAGGTACATTCTGTGTGTTGGGATACAAATGGAGATTATTTAGCATCGGTTAGTCGAGATTCTGTCAGAGTATGGGCGATCGCCTCGGGAGAATGCATTCACGAGCTCAGTTCCAGTGGAAATATGTTCAATTCTTGCGTTTTTCATCCTAGCTATCCCTCACTCTTGGTTATCGGCGGTTACCAGTCGTTGGAGCTGTGGAACATGGCTGAAAACAAATGTATGACGATGCCTGCTCACGAGTGCATGATTTCGTCGTTGGCTCAATCACCAGTAACAGGAATGGTCGCCTCCGCGAGCCACGACAAATCTGTCAAGATATGGAAATAA 2658 44.32 MESVNLRTRYLINKDLTFRTSEIGNAGVDLSLWSFLRLIRKMAQSNWEADKMLDVYIYDYLVKKKLHATAKSFMNEGKVAPDPVDFPSAYILSYILTALSVIEKVTKVTRVECKGEESVHIGTRLLSIDAPGGFLFEWWSVFWDIFIARTNEKHSEPAAAYIEAQQIKTKEQQQLQMQQLHLMRQAQLQRRDGSHPSLGGSLNAVNSEGMLGQPTASALAARMYEERMKNPNAIDSETSQPLLDARMALVKPATNHPGQLGNSGSVNAALQQIQARGQQPTDIKPEVNIGGTQRSLPMDPSSVYGPGLMQSKPGIGNTGLNPGGLPLKGWPLAGLEQIRPGLGAQVQKPFLQSANQFQLLPQQQQQLLAQVQAQGNLGSSPMYHDMDPQRFRGLQRSNLNTKDGQLIANDGSIGSPTMQSTSSKVSFPSGSAQMNIPQMQQSSSQQQDGLHPQQVQQNRKRKGPSSSGAANSTGTGNTIGPNSQPSTPSTHAPGDGAVIAPNMQNVNSMQKGLMLYGNDGTGGLASSTNQLEDMEHLGDIGSLDDNVESFLSHDDGDGRDLFGTLKRNPSEHAAENSKGPSFSEVGSMRKSNSKVVCCHFSSDGKLLASAGHDKRVVIWNMENLETEITPEEHTLIITDVRFRPNSTQLATSSFDTTIRLWDAAQPTYSLHAYTGHASQVASLDFHPKKNEIFCSCDANNEIRYWHVSQGSTHVSKASPMILYLFCSFKFPGGSGSTQVRFQPRIGQLLAAASDSVVSIIDFESDRLTLSLKGHSSEVHSVCWDTNGDYLASVSRDSVRVWAIASGECIHELSSSGNMFNSCVFHPSYPSLLVIGGYQSLELWNMAENKCMTMPAHECMISSLAQSPVTGMVASASHDKSVKIWK 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41472894 41483896 + Maker00031808 Lcy11g1767 647668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1767 885 MobiDBLite consensus disorder prediction 404 491 - -
Lcy11g1767 885 MobiDBLite consensus disorder prediction 276 297 - -
Lcy11g1767 885 Gene3D - 733 885 IPR015943 GO:0005515(InterPro)
Lcy11g1767 885 PRINTS G protein beta WD-40 repeat signature 872 885 IPR020472 -
Lcy11g1767 885 PRINTS G protein beta WD-40 repeat signature 649 663 IPR020472 -
Lcy11g1767 885 PRINTS G protein beta WD-40 repeat signature 607 621 IPR020472 -
Lcy11g1767 885 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 630 662 - -
Lcy11g1767 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 629 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 771 811 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 623 - -
Lcy11g1767 885 SMART WD40_4 581 620 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 SMART WD40_4 846 885 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 SMART WD40_4 666 706 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 SMART WD40_4 723 761 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 SMART WD40_4 805 844 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 SMART WD40_4 764 802 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 SMART WD40_4 623 662 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 673 715 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 630 662 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 853 885 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 CDD WD40 592 885 - -
Lcy11g1767 885 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 853 885 - -
Lcy11g1767 885 SMART Lish 49 81 IPR006594 GO:0005515(InterPro)
Lcy11g1767 885 ProSitePatterns Trp-Asp (WD) repeats signature. 607 621 IPR019775 -
Lcy11g1767 885 MobiDBLite consensus disorder prediction 568 587 - -
Lcy11g1767 885 ProSiteProfiles LIS1 homology (LisH) motif profile. 49 81 IPR006594 GO:0005515(InterPro)
Lcy11g1767 885 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 122 885 IPR044716 GO:0003714(InterPro)
Lcy11g1767 885 MobiDBLite consensus disorder prediction 404 500 - -
Lcy11g1767 885 SUPERFAMILY WD40 repeat-like 584 885 IPR036322 GO:0005515(InterPro)
Lcy11g1767 885 Gene3D - 563 723 IPR015943 GO:0005515(InterPro)
Lcy11g1767 885 Pfam LisH 51 77 IPR006594 GO:0005515(InterPro)
Lcy11g1767 885 Pfam WD domain, G-beta repeat 768 801 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 Pfam WD domain, G-beta repeat 590 620 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 Pfam WD domain, G-beta repeat 850 884 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 Pfam WD domain, G-beta repeat 631 662 IPR001680 GO:0005515(InterPro)
Lcy11g1767 885 Pfam WD domain, G-beta repeat 669 705 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1767 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1767 Lcy-Chr11:41472894 Lcy13g1301 Lcy-Chr13:30493718 4.53E-165 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g845 . Blo12g00125 Bda03g01113 . Bpe04g01058 Bpe14g01295 Bma04g01041 . Cmo08g01006 Cmo17g00119 Cma06g01265 Cma14g01872 Car06g01087 Car14g01674 . Cpe08g00382 . Bhi01g00001 . . . . . Lcy11g1767 Cla06g00739 Cam06g0790 Cec06g0796 . Clacu06g0789 Cmu06g0763 Cre06g1543 Cone14ag0210 Cone15ag0231 . Cone4ag0383 Lsi05g01813 . Chy05g00262 Cme06g00410 . . . Bda13g00500 . . . . . Cmo06g01274 Cmo14g01918 Cma08g01035 Cma17g00116 Car08g00910 Car17g00103 Cpe12g00102 Cpe17g00243 Bhi12g01517 Tan06g2326 . . . . Lcy13g0445 Cla05g00372 Cam05g0405 Cec05g0410 Cco05g0410 Clacu05g0400 Cmu05g0385 Cre05g0447 Lsi09g01161 Csa03g01128 Chy06g00395 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003818 2 3 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19160 None None None None Lcy TR