Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1769 ATGGGTAGCGGAGAAAAGGTCTTCACCTTGAAGGAAGTCGCCGAGCACAACGATCACAAGGACTGCTGGCTCGTCATCAGTGGAAAGGTATATGATGTGACCAAATTCTTAGAAGACCATCCTGGTGGTGATGATGTTTTGTTATCAGCTACAGGAAAAGATGCAACCGACGATTTCGAAGACGTTGGGCACAGTGACAATGCAAGAGAAATGATGGAGCAATACTATGTTGGGGAGATTGATGCTTCAACAATTCCGAAGAAGGTCGCATACACACCTCCAAAACAGCCTCATTACAATCAGGACAAGACATCCGAGTTCATCATCAAGCTTCTCCAATTCCTCGTTCCGCTTGCAATTTTGGGATTGGCAGTCGCGATACGCTTCTACACCAAACAAGCTTGA 405 45.93 MGSGEKVFTLKEVAEHNDHKDCWLVISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMEQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41500761 41504112 - Maker00031464 Lcy11g1769 647670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1769 134 FunFam Cytochrome b5 type B 3 85 - -
Lcy11g1769 134 SMART Cyt_b5_2 8 81 IPR001199 -
Lcy11g1769 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 90 IPR036400 -
Lcy11g1769 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Lcy11g1769 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Lcy11g1769 134 PANTHER CYTOCHROME B5 5 131 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Lcy11g1769 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Lcy11g1769 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Lcy11g1769 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Lcy11g1769 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Lcy11g1769 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Lcy11g1769 134 Gene3D - 2 86 IPR036400 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1769 Lcy-Chr11:41500761 Lcy3g0069 Lcy-Chr3:1833861 2.30E-51 dispersed
Lcy13g1645 Lcy-Chr13:35406354 Lcy11g1769 Lcy-Chr11:41500761 2.10E-36 transposed
Lcy11g1769 Lcy-Chr11:41500761 Lcy12g2032 Lcy-Chr12:41663371 1.05E-65 wgd
Lcy11g1769 Lcy-Chr11:41500761 Lcy13g0455 Lcy-Chr13:5422322 6.02E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1769 K23490 - csv:101214209 271.552