Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1771 ATGGAGAAAGACGATAACTACTCGAACGAAGCTCCCATGCCTCCAAATTTCTCCGGCCACCACCACCACCACGATCTCTACAACAACCAAGACCAATTCATGGGGTCTCGCCCCCTCGAAACCTCCGCCGATAACGCCGCCGGAATCCTCACCTACTTCCCGGCCAACCCTCCGCCGCCGCCGCCGCCGCTGCAGCCAATAACTTCTCTGGACAAGCTCAGCTTCTCGGAGGTCATGCAGTTCGCCGACTTCGGTCCGAAGCTCAGCCTCACCCGGTTCGACGAGCAGGACGAACCGGCCGGGATCGACCCGGTCTACTTCCTGAAGTTCCCGGTCCTGAACAACGAGAGGACGGAGGAGCCGCCGCCCGGAGAAGAGGAGGAGGCGGCGGCGGAGATGGGAGGCAGAATTGCAGGGGAATTAGAAGAAGAGGAGAATTTTAAAAATAATAATAATAATTGTAATAATAATAATGGTAATAATAAAAGGAAGAGAGGGAGGACGGTGAAGACAAGTGAAGAAGTGGAGAGTCAAAGAATGACGCATATTGCAGTGGAGAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGGGTTCTGCGTTCTCTCATGCCTGGCTCCTACGTTCAAAGGGGAGATCAAGCTTCAATAATCGGCGGAGCAATCGAGTTCGTGAGGGAGCTGGAGCAACTCCTCCAGTGTCTAGAATCCCAAAAACGGCGTCGTCTTTTAGGAGAACCGCCACTGCAGGCGGCCGAGCAGCCGCCGCCGCAGCAAGCGGCGTTTCTGGCGGCGGCGGGAGGAGGTAATTTTGGAGGTCATGAACAAAACGAGGGGCAAATGTTCGAAACGACGGCGGAGAGCAAATCGTGCCTTGCTGACGTGGAAGTGAAGGTTGTAGGGTTCGACGCGATGATAAAAATCCTATCGAGAAGACGGCCGGGACAGCTGATCAAAGCCATAGCCGCCCTTGAAGATTTGCAGCTCAATATTCTTCATACCAATATCACCACCATTGAACAGACTGTTCTTTATTCATTCAACGTCAAGATAGCGAGCGAGTCAAGCTTCACAGCAGAAGACATAGCGAGCTCAATTCAGCAGATATTCGGTTTTATTCATGCAAACACCGCCATGTGA 1140 52.63 MEKDDNYSNEAPMPPNFSGHHHHHDLYNNQDQFMGSRPLETSADNAAGILTYFPANPPPPPPPLQPITSLDKLSFSEVMQFADFGPKLSLTRFDEQDEPAGIDPVYFLKFPVLNNERTEEPPPGEEEEAAAEMGGRIAGELEEEENFKNNNNNCNNNNGNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEPPLQAAEQPPPQQAAFLAAAGGGNFGGHEQNEGQMFETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESSFTAEDIASSIQQIFGFIHANTAM 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41518815 41524020 + Maker00032116 Lcy11g1771 647672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1771 379 CDD ACT_UUR-ACR-like 305 369 - -
Lcy11g1771 379 Gene3D - 169 243 IPR036638 GO:0046983(InterPro)
Lcy11g1771 379 MobiDBLite consensus disorder prediction 147 180 - -
Lcy11g1771 379 MobiDBLite consensus disorder prediction 148 162 - -
Lcy11g1771 379 MobiDBLite consensus disorder prediction 1 39 - -
Lcy11g1771 379 CDD bHLH_AtFAMA_like 180 248 - -
Lcy11g1771 379 SUPERFAMILY ACT-like 305 370 IPR045865 -
Lcy11g1771 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 228 IPR011598 GO:0046983(InterPro)
Lcy11g1771 379 MobiDBLite consensus disorder prediction 166 180 - -
Lcy11g1771 379 FunFam Basic helix-loop-helix transcription factor 168 243 - -
Lcy11g1771 379 ProSiteProfiles ACT domain profile. 305 379 IPR002912 -
Lcy11g1771 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 248 IPR036638 GO:0046983(InterPro)
Lcy11g1771 379 PANTHER TRANSCRIPTION FACTOR FAMA 97 371 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Lcy11g1771 379 SMART finulus 183 234 IPR011598 GO:0046983(InterPro)
Lcy11g1771 379 Pfam Helix-loop-helix DNA-binding domain 178 229 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1508 Lcy-Chr11:38969433 Lcy11g1771 Lcy-Chr11:41518815 1.70E-37 dispersed
Lcy11g1771 Lcy-Chr11:41518815 Lcy11g2152 Lcy-Chr11:45076477 3.24E-48 dispersed
Lcy11g1771 Lcy-Chr11:41518815 Lcy6g2225 Lcy-Chr6:46675617 4.48E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19161 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1771 K26213 - csv:101214530 483.026