Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1775 ATGCTCTCTGGGTTTTCTCAGGAGCCGGCCGGAATGTACTCGGCCATTCCGGCGCTGCCGATGGACGGCGGCGGCCACGGCCACGGCAAGTTTCAGGGGTCTCTCGACGGAACGAATCTTCCCGGCGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCACGAGCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCCGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGATATTTACACCATATGTTTTCTTGATGCCTTGTGCTGGCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACTGAGAACTCAAAGGATGATGTCTTTCGTTGAGTACTCTTGTTTTTCGAACAGCGGTTTCCAAGTCACGGAGGCTTTGCGAGTGCAAATGGAGGTTCAGAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTACAATCGATACTCGAGCGGGCTTGTCAAGCATTGAGCGATCAGACTGCAGCGTCTGCAGGACTCGAAGCTGCTAGGGAAGAGCTCTCTGAACTGGCAATCAAAGTCTCCAATGACTCTAAAGAGATGGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAACCGAAAAGCTCCTACTGTTATGGCTCGAATAGGCGATTGCTCCATGGATAGCTGCCTGACATCAGCTGGAAGCCCGGTTTCCCCGATCGGAGTAGGATCAGCCAACACAATGAAGAGACCGAGACCAGTCTTTAGTCACGGAGATTCAATGGCTCTCGAGGGCAATGCACGGCACGATGTCGAATGGATGATGAGTAATATTGGATGA 951 51.95 MLSGFSQEPAGMYSAIPALPMDGGGHGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQIFTPYVFLMPCAGRNIGSGSNRSRNRLRTQRMMSFVEYSCFSNSGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSANTMKRPRPVFSHGDSMALEGNARHDVEWMMSNIG 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41555518 41559626 + Maker00031854 Lcy11g1775 647676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1775 316 Pfam MYB-CC type transfactor, LHEQLE motif 150 195 IPR025756 -
Lcy11g1775 316 Coils Coil 207 227 - -
Lcy11g1775 316 Pfam Myb-like DNA-binding domain 55 103 IPR001005 -
Lcy11g1775 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 103 IPR017930 -
Lcy11g1775 316 NCBIfam myb-like DNA-binding domain, SHAQKYF class 53 105 IPR006447 GO:0003677(InterPro)
Lcy11g1775 316 Gene3D - 52 106 - -
Lcy11g1775 316 FunFam Myb family transcription factor 52 108 - -
Lcy11g1775 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 32 275 IPR046955 GO:0003700(InterPro)
Lcy11g1775 316 SUPERFAMILY Homeodomain-like 53 107 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1775 Lcy-Chr11:41555518 Lcy8g1657 Lcy-Chr8:43186277 4.51E-43 dispersed
Lcy11g1775 Lcy-Chr11:41555518 Lcy11g0853 Lcy-Chr11:25350619 8.33E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19162 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1775 - - - 0.0