Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1775 | ATGCTCTCTGGGTTTTCTCAGGAGCCGGCCGGAATGTACTCGGCCATTCCGGCGCTGCCGATGGACGGCGGCGGCCACGGCCACGGCAAGTTTCAGGGGTCTCTCGACGGAACGAATCTTCCCGGCGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCACGAGCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCCGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGATATTTACACCATATGTTTTCTTGATGCCTTGTGCTGGCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACTGAGAACTCAAAGGATGATGTCTTTCGTTGAGTACTCTTGTTTTTCGAACAGCGGTTTCCAAGTCACGGAGGCTTTGCGAGTGCAAATGGAGGTTCAGAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTACAATCGATACTCGAGCGGGCTTGTCAAGCATTGAGCGATCAGACTGCAGCGTCTGCAGGACTCGAAGCTGCTAGGGAAGAGCTCTCTGAACTGGCAATCAAAGTCTCCAATGACTCTAAAGAGATGGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAACCGAAAAGCTCCTACTGTTATGGCTCGAATAGGCGATTGCTCCATGGATAGCTGCCTGACATCAGCTGGAAGCCCGGTTTCCCCGATCGGAGTAGGATCAGCCAACACAATGAAGAGACCGAGACCAGTCTTTAGTCACGGAGATTCAATGGCTCTCGAGGGCAATGCACGGCACGATGTCGAATGGATGATGAGTAATATTGGATGA | 951 | 51.95 | MLSGFSQEPAGMYSAIPALPMDGGGHGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQIFTPYVFLMPCAGRNIGSGSNRSRNRLRTQRMMSFVEYSCFSNSGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSANTMKRPRPVFSHGDSMALEGNARHDVEWMMSNIG | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 41555518 | 41559626 | + | Maker00031854 | Lcy11g1775 | 647676 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1775 | 316 | Pfam | MYB-CC type transfactor, LHEQLE motif | 150 | 195 | IPR025756 | - | |
Lcy11g1775 | 316 | Coils | Coil | 207 | 227 | - | - | |
Lcy11g1775 | 316 | Pfam | Myb-like DNA-binding domain | 55 | 103 | IPR001005 | - | |
Lcy11g1775 | 316 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 50 | 103 | IPR017930 | - | |
Lcy11g1775 | 316 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 53 | 105 | IPR006447 | GO:0003677(InterPro) | |
Lcy11g1775 | 316 | Gene3D | - | 52 | 106 | - | - | |
Lcy11g1775 | 316 | FunFam | Myb family transcription factor | 52 | 108 | - | - | |
Lcy11g1775 | 316 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 32 | 275 | IPR046955 | GO:0003700(InterPro) | |
Lcy11g1775 | 316 | SUPERFAMILY | Homeodomain-like | 53 | 107 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1775 | Lcy-Chr11:41555518 | Lcy8g1657 | Lcy-Chr8:43186277 | 4.51E-43 | dispersed | |
Lcy11g1775 | Lcy-Chr11:41555518 | Lcy11g0853 | Lcy-Chr11:25350619 | 8.33E-45 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19162 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1775 | - | - | - | 0.0 |