Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1784 CACCGGAAGGAGCTCGAAAGCACAGCCATGGCGAAAGCCGATAACATCCTCCAAACTCTCGGAGACTTCACCAGCAAAGAGAATTGGGACAATTTCTTCACCATCCGCGGCCATGGCGATGCTTTCGAATGGTATGCTGAGTGGCCCGAGCTCAAAGACCCTCTCATTTCCCACCTTCCCGACCTCTCCCAATCCCCTTCTCCCCAGATTCTCGTTCCTGGTTGCGGCAATTCCAATCTCTCGGAACAGCTCTACGACGCCGGCTTTCGATGCATCACCAACATTGATTTCTCTAAAGTTGCAATCTCCGATATGCTGCGCCGGAACGTGAGGGAACGCCCCGATATGCGGTGGCGCGTCATGGATATGACGAGCATGCAGGTAGTTAAGCTATTGGTGCTGAATTTGATTGTCGAAATGTTCTGTGTTGGACATTGTTGGCGTAGGATCTCGCCCCATCCTCTCTTTCTCTCAATCCACCGATCTTCGTCTGATCGGAAAATGTTGGAGGTGTTGGCCCTTCTTTCCTTGTTAGGTGGGGCCTCAGTCGAGTTTTCTGGCAGGGGGACGGTTTTGCTTGGGAGGGTGAATAGCATGTATTGCATTGTGAGATATTTTTCTGTTGTGGTGGATCCTCATTGTGCTTTACAGTTCACGGATGATACATTCGATGCTGTTGTTGATAAAGGTGGTTTGGATGCTTTAATGGAGCCAGAAGTTGGCTCTAAGCTGGGAAGTCAATACTTATCTGAGGTGAAGAGAGTTCTAAAACCAGGAGGAAAGTTCATCTGTCTGACCTTAGCAGAATCTCATGTTCTAGGCTTGCTTTTTCCCAAGTTCCGTTTCGGATGGAAAATGAGTATTCATGTCATACCTCAAAAACCACAGAGTAAACCTAATTTTCAAACTTTTATGGTGGTGGTGGATAAAGATGAATCTACTACATGGCACCAGATAGAATCTTCTTTAAATTTTTCTTTGCTGGATTCCCGTGAAAATCAGACTCGTGAACTTGTCCAAACTCTTGAGAATGAGAATAGAATTCGCCAGAAGTATTCTAGTGGTGCTGATTTATTGTTCTCTCTCGAAGACCTGAAGCTTGGAGCAAAGGGAGATCTGCAGAAGCTTCACCAAGGGCGTCGAGTTCAATTTACTTTAGGTGGACAAGGGACCTCCATTTTCAGTTACAGAGCTGTACTTCTTGATGCTCAGGAACAGTCTGGCCCATTCTTGTACGAATGTGGAGTTTTTATAGTGCCTAAGACTCGAGCTCATGAATGGCTGTTCTCTTCGGAAGAAGGCCAGTGGATGGTTGTTGAAAGCTCAAAAGCAGCTCGCCTTATAATGATTCTATTAGATGAGACACAATCGGGTGCCAACATGGATGCTATTCAGAAAGACTTATCTCCCCTAGTTAAACAATTGGCACCCGGAGAAGATGACAGTGGATCTCAAATTCCATTTATGATGGCAAGTGATGGGATCAAGGAACGCAATTGTGTATTCCAGGGTACATCTTCATTAACTGGTTCAATTGTTGTTGAAGATGTAATATATGAACATGTAAGTGGTGATGCCAGCCGCATCTTCCCATCTGGAGATTTGATATTTCGTCGCCTTATTTTCCAAAGAACAGAGAGTTTGGTGCAGTCTGAAGCTTTGTTGACTAGGGAAAGACTTCCTGAGAAAGTTTCTGGTCAGATGGACAGGAAAAAGTCTCATTCATCATCCAAATCAAAAAATAAAGGAAAGAAGAGACTGAACAAGGAGTCTAGTGGCCAAATGAAGGTTCATCATGGCTATCTGGCAAGTTCTTACCATTCAGGGATCATTTCTGGGTTTATGTTGATATCTCGATATTTGGAGAGTGTAGCATCAGCTGGAACAAAGGCAAAGGTCCTCTCCTGCTACTTATGTCTTGTGAATACAGTTGTCATTGGTCTTGGAGCAGGTTTACTGCCCATGTTTCTCCGTGCATGCATGTGTTTTTTACACATTGAGGTGGTTGAGTTAGATTCGATGATCCTCAATCTTGCAAGGGATTACTTTGATTTTTCTGAGGATGCTGATTTGGTGGTTCATATTGCTGATGGGATTCAGTTTGTTAGAGAATTCAGAAATCCTAGGACAACTGGTTCATCAACTGCTGTTCTTGACAATGGAAACTCTTCTCAAGTGGAAGAGCGAGGAAACAAGAAGATTGACTTACTTATTATTGACGTGGATGCAACAGATTCAAGCTCTGGAATGACCTGCCCAGCGGCTGATTTTGTGGAAGAGCCATTTCTTCAGGCAGTGAAAGACGCCCTCTCCGAGCAAGGTCTTTTTATTGTAAACTTGGTCACACGATCTCCAACCGTTAACGATATGGTTGTCTCGAGGATGAAAGGAGTCTTTAATCACCTCTTTTCCCTTCAACTCGAGGAAGATGTGAATGAAGTGCTTTTTGCTCTTCCTTCAGAGTTCTGTATAAAGGAGGATCTCTTCAATGAAGCAGCTCTTCAACTTGAAAAACTTTTAAATCTGAAACACCCAGAAATGAGGCAGAGCACAGTTGATGCTACAAAAAAAATCAGATGTTTGAAATAG 2589 43.88 HRKELESTAMAKADNILQTLGDFTSKENWDNFFTIRGHGDAFEWYAEWPELKDPLISHLPDLSQSPSPQILVPGCGNSNLSEQLYDAGFRCITNIDFSKVAISDMLRRNVRERPDMRWRVMDMTSMQVVKLLVLNLIVEMFCVGHCWRRISPHPLFLSIHRSSSDRKMLEVLALLSLLGGASVEFSGRGTVLLGRVNSMYCIVRYFSVVVDPHCALQFTDDTFDAVVDKGGLDALMEPEVGSKLGSQYLSEVKRVLKPGGKFICLTLAESHVLGLLFPKFRFGWKMSIHVIPQKPQSKPNFQTFMVVVDKDESTTWHQIESSLNFSLLDSRENQTRELVQTLENENRIRQKYSSGADLLFSLEDLKLGAKGDLQKLHQGRRVQFTLGGQGTSIFSYRAVLLDAQEQSGPFLYECGVFIVPKTRAHEWLFSSEEGQWMVVESSKAARLIMILLDETQSGANMDAIQKDLSPLVKQLAPGEDDSGSQIPFMMASDGIKERNCVFQGTSSLTGSIVVEDVIYEHVSGDASRIFPSGDLIFRRLIFQRTESLVQSEALLTRERLPEKVSGQMDRKKSHSSSKSKNKGKKRLNKESSGQMKVHHGYLASSYHSGIISGFMLISRYLESVASAGTKAKVLSCYLCLVNTVVIGLGAGLLPMFLRACMCFLHIEVVELDSMILNLARDYFDFSEDADLVVHIADGIQFVREFRNPRTTGSSTAVLDNGNSSQVEERGNKKIDLLIIDVDATDSSSGMTCPAADFVEEPFLQAVKDALSEQGLFIVNLVTRSPTVNDMVVSRMKGVFNHLFSLQLEEDVNEVLFALPSEFCIKEDLFNEAALQLEKLLNLKHPEMRQSTVDATKKIRCLK 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41630880 41640300 + Maker00031623 Lcy11g1784 647685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1784 862 MobiDBLite consensus disorder prediction 560 574 - -
Lcy11g1784 862 Pfam Methyltransferase domain 208 264 IPR013216 GO:0008757(InterPro)
Lcy11g1784 862 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 24 278 IPR029063 -
Lcy11g1784 862 Gene3D Vaccinia Virus protein VP39 588 853 IPR029063 -
Lcy11g1784 862 Gene3D Vaccinia Virus protein VP39 204 326 IPR029063 -
Lcy11g1784 862 Gene3D Vaccinia Virus protein VP39 21 150 IPR029063 -
Lcy11g1784 862 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 632 782 IPR051419 -
Lcy11g1784 862 MobiDBLite consensus disorder prediction 560 594 - -
Lcy11g1784 862 Pfam Spermine/spermidine synthase domain 659 804 - -
Lcy11g1784 862 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 644 828 IPR029063 -
Lcy11g1784 862 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 584 842 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1784 K25166 - - csv:101211869 1096.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0488 Lcy-Chr13:5888806 Lcy11g1784 Lcy-Chr11:41630880 1.20E-30 transposed
Lcy13g0489 Lcy-Chr13:5892981 Lcy11g1784 Lcy-Chr11:41630880 1.91E-105 transposed
Lcy3g1874 Lcy-Chr3:45921654 Lcy11g1784 Lcy-Chr11:41630880 5.63E-08 transposed
Lcy8g0958 Lcy-Chr8:34008675 Lcy11g1784 Lcy-Chr11:41630880 2.29E-11 transposed
Lcy11g1784 Lcy-Chr11:41630880 Lcy13g0487 Lcy-Chr13:5877494 1.89E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g950 . . Bda03g01134 . Bpe04g01077 . . . . . . . . . Sed02g1516 Cpe08g00405 . Bhi01g00216 Tan10g0506 Cmetu06g0645 Lac12g2024 Hepe05g1769 . Lcy11g1784 . . . . . . . . Cone15ag0259 . . Lsi05g01851 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010449 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 32