Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1789 ATGGGATTATCTTCCGATAACATCCATGGCCTCATTCTCGCTGTCTCTTCGAGTATCTTCATCGGTAGCAGCTTCATTATCAAGAAGAAAGGTCTTATGAAAGCCGGTGCTACTGGAACCAGAGCAGGTTCTGGAGGATATTCGTACTTGCATGAACCAATGTGGTGGGCTGGGATGATTAGTATGATTGTTGGAGAGGTTGCTAATTTCGCTGCGTATGCGTATGCTCCTGCAATTCTTGTTACTCCTTTGGGAGCTTTAAGTATAATTTTCAGTGCAGTACTAGCTCATTTCATTTTGGAGGAGAGGCTACATATCTTCGGCATGCTCGGGTGTGTTCTCTGTGTGGTGGGATCGACAACTATTGTTTTGCATGCTCCTCAGGAGAGAAATATTGAATCTGTCAAGGAAGTTTGGTTACTTGCTACAGAGCCAGGTTTCCTAGTATACTCCGTCATAGTTTTGGTTCTAGTTGTTGTTCTCATTGTTCGATATGTGCCAAGATATGGACAAACCCACATGGTCGTTTACGTTGGAATTTGTTCTCTCATGGGTTCTCTTACGGTTATGAGCGTCAAAGCAGTAGGAATCGCACTTAAGCTGACATTTTCAGGATTGAATCAGTTCAAGTACTTTGAGACGTGGTTTTTTACAGTCCTCGTGATAGGAGGTAGCATTTTGCAGGTGAACTACTTAAACAAGGCTCTGGACACCTTTAACACTGCTGTAGTATCTCCAGTTTACTACGTGATGTTCACATCACTCACCATCCTTGCCAGTATGATTATGTTTAAGGTCCAGGACTGGGATTCACAAAATGCATCACAAATAGCAACCGAGTTATGTGGTTTTGTAACAATTCTATCTGGAACTTTTCTCCTACACAAAACCAGGGACATGGGGAGTTCTCCGTCCTCAGAAGTTCCGATTGTCGTTAGGTCCCCAAAACGACCTAGTACGAACACAAGTTCCGACTAA 978 43.25 MGLSSDNIHGLILAVSSSIFIGSSFIIKKKGLMKAGATGTRAGSGGYSYLHEPMWWAGMISMIVGEVANFAAYAYAPAILVTPLGALSIIFSAVLAHFILEERLHIFGMLGCVLCVVGSTTIVLHAPQERNIESVKEVWLLATEPGFLVYSVIVLVLVVVLIVRYVPRYGQTHMVVYVGICSLMGSLTVMSVKAVGIALKLTFSGLNQFKYFETWFFTVLVIGGSILQVNYLNKALDTFNTAVVSPVYYVMFTSLTILASMIMFKVQDWDSQNASQIATELCGFVTILSGTFLLHKTRDMGSSPSSEVPIVVRSPKRPSTNTSSD 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 41683647 41691798 - Maker00031831 Lcy11g1789 647690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1789 325 PANTHER UNCHARACTERIZED 2 307 IPR008521 GO:0015095(InterPro)|GO:0015693(PANTHER)|GO:0015693(InterPro)|GO:0016020(InterPro)|GO:0016020(PANTHER)
Lcy11g1789 325 MobiDBLite consensus disorder prediction 299 325 - -
Lcy11g1789 325 Pfam Magnesium transporter NIPA 6 300 IPR008521 GO:0015095(InterPro)|GO:0015693(InterPro)|GO:0016020(InterPro)
Lcy11g1789 325 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1789 K22733 - - csv:101210887 563.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2347 Lcy-Chr10:47028143 Lcy11g1789 Lcy-Chr11:41683647 3.73E-109 dispersed
Lcy11g1789 Lcy-Chr11:41683647 Lcy6g0585 Lcy-Chr6:5532203 7.47E-117 dispersed
Lcy2g1266 Lcy-Chr2:13540043 Lcy11g1789 Lcy-Chr11:41683647 8.25E-117 transposed
Lcy3g0920 Lcy-Chr3:32430336 Lcy11g1789 Lcy-Chr11:41683647 6.14E-127 transposed
Lcy7g0017 Lcy-Chr7:187352 Lcy11g1789 Lcy-Chr11:41683647 2.12E-90 transposed
Lcy9g0732 Lcy-Chr9:24897860 Lcy11g1789 Lcy-Chr11:41683647 1.15E-73 transposed
Lcy11g1789 Lcy-Chr11:41683647 Lcy13g0492 Lcy-Chr13:5908989 4.56E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g940 . Blo12g00105 Bda03g01137 . Bpe04g01080 . . . . . . . Car06g01056 Car14g01706 Sed02g1524 Cpe08g00410 Cpe03g01606 Bhi01g00201 Tan10g0500 Cmetu06g1928 Lac12g1917 Hepe05g1774 . Lcy11g1789 Cla06g00779 Cam06g0833 Cec06g0848 Cco06g0858 Clacu06g0836 Cmu06g0807 Cre06g1588 . . . . Lsi05g01856 Csa02g00902 . Cme06g00369 . . Bda11g00339 . . . . . . Cmo06g01241 Cmo14g01960 . . . . . . Bhi12g01473 Tan06g2276 . . . . . Cla05g00333 Cam05g0365 Cec05g0369 Cco05g0370 Clacu05g0360 Cmu05g0345 Cre05g0409 Lsi09g01120 Csa03g01081 Chy06g00350 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000165 6 10 5 4 5 5 8 5 6 6 6 5 4 5 6 7 5 7 8 5 6 6 6 5 5 6 6 21 17 4 200