Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1856 ATGGCTGGCCACTTGGGCTCTGCTTCTCACTTCGTTCATCAACTTCAGCACCGTTCTGTCGATCTACAACTGCAGCGGCCGCTGGACGCCGACGACGGTTCTGACCAGTTCCACGGCGGCGATGACGACCACAACAACTCCCACCAACCCAACTCCGGCGGCGAAATCGTGGCCCGCCGCCCGAGAGGCCGACCGCCCGGTTCGAAAAATAAACCGAAGCCACCGGTTATTATCACCAGAGAAAGCGCCAACACCCTTCGAGCCCACATCTTGGAAGTCAACACCGGCTGCGATGTCTTTGACTCGGTGGCCACGTATGCTCGTAAGCGCCAACGTGGGATCTGCATCCTCAGCGGCACTGGCGCGGTCACCAACGTCACCTTGCGGCAACCTGCGTCGGCCGGCGCCGTTGTCACGCTCCATGGCAGATTTGAGATATTGTCTTTGTCGGGATCGTTTCTACCACCACCGGCTCCTCCAGGGGCCACGAGTTTGACTATCTTCCTTGCCGGAGGGCAAGGACAAATCGTCGGAGGAAATGTTGTCGGCTCTTTGATTGCTTCGGGACCGGTGATTGTTATCGTGTCGTCGTTTACCAATGTTGCCTACGAGAGGCTGCCGTTGGACGAGGAGGAACCGTCCAACGGCGGCGGCGGTGGAGGGAGCCTCAGCAACCCGTTTCCGGACCCGTCGGCCGGGTTGCCGTTCTTGAATCTGCCGTTGAACATGTCGGGGAATCAAAATCAGCTGCCGGTGGACGGATGGGGCGGAGGGAACTCCGGCGGGAGAGCATCTTATTGA 801 59.43 MAGHLGSASHFVHQLQHRSVDLQLQRPLDADDGSDQFHGGDDDHNNSHQPNSGGEIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVNTGCDVFDSVATYARKRQRGICILSGTGAVTNVTLRQPASAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQIVGGNVVGSLIASGPVIVIVSSFTNVAYERLPLDEEEPSNGGGGGGSLSNPFPDPSAGLPFLNLPLNMSGNQNQLPVDGWGGGNSGGRASY 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42349531 42351107 - Maker00032188 Lcy11g1856 647757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1856 266 FunFam AT-hook motif nuclear-localized protein 86 213 - -
Lcy11g1856 266 MobiDBLite consensus disorder prediction 26 76 - -
Lcy11g1856 266 ProSiteProfiles PPC domain profile profile. 83 220 IPR005175 -
Lcy11g1856 266 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 211 - -
Lcy11g1856 266 Gene3D - 86 214 - -
Lcy11g1856 266 MobiDBLite consensus disorder prediction 31 45 - -
Lcy11g1856 266 Pfam Plants and Prokaryotes Conserved (PCC) domain 87 199 IPR005175 -
Lcy11g1856 266 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 218 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy11g1856 266 CDD DUF296 87 198 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1856 Lcy-Chr11:42349531 Lcy12g1745 Lcy-Chr12:38211174 3.86E-84 dispersed
Lcy11g1856 Lcy-Chr11:42349531 Lcy12g1939 Lcy-Chr12:40759154 1.11E-94 wgd
Lcy11g1856 Lcy-Chr11:42349531 Lcy13g0544 Lcy-Chr13:6867866 9.60E-109 wgd
Lcy11g1856 Lcy-Chr11:42349531 Lcy6g2215 Lcy-Chr6:46493877 2.18E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1856 - - - 0.0