Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1868 ATGCTCTCTTCCCACATCACTCCTTCAAAAAATCCCCTCTCCACCAACCCCACTTCCCCTTTTCCTCTCTCCTTCCCAAATCTCCTCCCAACCGTCCGATCAAAATCCCCCCGTCGCCCCCAAATCTCCTCCTCCGCCGCCATTAATGGCGTCTCTTCAAAACCCACTTCTCAGTTTCTCAATCCAATCCCCAAATCGAGCAGATTCTGCAAAAATCCTGCGAACCCATTTAGGGTTTTTCCGTCTAAATCCAACCCCCTTGTCCCCGCCGCTGCCGCTGCCGACGGCGGCGATACCACCGCCGATTCCGCCTCCAATAGCAAAACCCTTCAGCTCGCCGTCGTGTTCGGGTTCTGGTATTTCCAGAACATCGTCTTCAATATCTACAACAAGAAGGTTCTCAACATCTTCCCTTTCCCATGGCTTCTCGCTTCGTTTCAGCTCTTCGCTGGATCGGTTTGGATGCTCGTTCTTTGGTCGTTGAAGCTTCAGCCATGCCCTAAAATTTCTAAGCCCTTCATAATCGCTCTCCTCGGCCCCGCTTTGTTTCACACAATCGGCCATATCTCCGCCTGTGTTTCGTTCTCGAAAGTCGCTGTTTCTTTCACACACGTCATTAAATCGGCTGAACCAGTCTTCTCGGTTCTGTTCTCCTCGTTCCTCGGCGATTCGTATCCATTACAGGTCTGGCTCTCGATTCTCCCCATTGTCTTTGGCTGCTCTCTGGCCGCCATTACTGAAGCTTCCTTCAATTTCGAAGGTCTGTCAGGCGCCATGATCAGCAATGTGGGGTTTGTTTTAAGAAACATTTACTCCAAAAGAAGCTTGCAGAGCTTCAAGGAGGTTAACGGGTTGAATTTATATGGTTGGATTAGTATAATTTCTTTGTTGTATCTGTTTCCTGTGGCCATTTTCGTTGAAGGGTCGAAATGGGTTCAAGGATATCATCAAGCAATTGCTTCCATTGGAAATGCTTCAACATTATATATATGGGTTCTGATTTCTGGAATCTTTTATCATCTTTATAATCAATCTTCTTACCAAGCTTTGGATGAGATCAGTCCTTTGACATTCTCTGTTGGGAATACAATGAAGAGAGTGGTTGTGATTGTGTCTTCTGTGTTGGTTTTTAGAAATCCAATTAGGCCTTTGAATGCTGTGGGTTCTGCCATTGCCATTTTTGGGACTTTTCTGTATTCTCAGACGACGACGAAGAAGAGTGCTAAGAAGATTGAGGAAGGTGAAAAGAAGGATTGA 1257 46.38 MLSSHITPSKNPLSTNPTSPFPLSFPNLLPTVRSKSPRRPQISSSAAINGVSSKPTSQFLNPIPKSSRFCKNPANPFRVFPSKSNPLVPAAAAADGGDTTADSASNSKTLQLAVVFGFWYFQNIVFNIYNKKVLNIFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFSVLFSSFLGDSYPLQVWLSILPIVFGCSLAAITEASFNFEGLSGAMISNVGFVLRNIYSKRSLQSFKEVNGLNLYGWISIISLLYLFPVAIFVEGSKWVQGYHQAIASIGNASTLYIWVLISGIFYHLYNQSSYQALDEISPLTFSVGNTMKRVVVIVSSVLVFRNPIRPLNAVGSAIAIFGTFLYSQTTTKKSAKKIEEGEKKD 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42446244 42447500 + Maker00031294 Lcy11g1868 647769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1868 418 PANTHER SOLUTE CARRIER FAMILY 35 106 402 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Lcy11g1868 418 MobiDBLite consensus disorder prediction 29 59 - -
Lcy11g1868 418 MobiDBLite consensus disorder prediction 1 22 - -
Lcy11g1868 418 MobiDBLite consensus disorder prediction 1 59 - -
Lcy11g1868 418 Pfam Triose-phosphate Transporter family 110 400 IPR004853 -
Lcy11g1868 418 SUPERFAMILY Multidrug resistance efflux transporter EmrE 290 401 - -
Lcy11g1868 418 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 110 409 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1913 Lcy-Chr10:43243382 Lcy11g1868 Lcy-Chr11:42446244 8.38E-80 dispersed
Lcy11g1868 Lcy-Chr11:42446244 Lcy9g1211 Lcy-Chr9:36492485 4.49E-107 dispersed
Lcy11g1868 Lcy-Chr11:42446244 Lcy1g0432 Lcy-Chr1:3821619 1.19E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1868 K15283 - csv:101219051 695.656