Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1878 ATGGCAGCCATTAGAGGCCATTATTCGATTCTCGTTTTTGTTGTTCTTGTTGTTCTTATTTTTCCGTCGGCCATTTTTTCTTATTCCGAAAAGGAAATAAAAAATTGGTGTAGCCAAACACCCTATCCAGCTCCATGTGAAGATTTTCTCAAAACAAAATCCACAACAAACAAGTCCCCAATCGCTACAAAATCCCATTTCCTCAAAATCCTAGTAGAAACGGCACTGGAGCGTGCCGTTTCGGCTCACAAAACCGCGCTTTCCTACGGCCCCAAGTGCCGAAACGGCCGAGAAAAATCTGCATGGACCGACTGCGTCGAGCTCTACGACCAGATCATAAAGCGGCTCAACCGGACCGCCGACCGGTGCTCCTCGGCCGACGCCCAGACCTGGCTCAGCGCCGCCCTCACCGCCCTCGAGACCTGCCGGACCGGCTTCGAGGAGCTCGGCGTTTCCGGTTTCGGGTACTCTTTGACGGCGAATAATGTTTCGAAGCTGATCAGTGATGGGTTGTCGGTGAATAAGCCGGCGTCGCCGGAGGCGTTTGATCCGCCGAGCATGGAGGACGGGTTTCCGACGTGGGTTCGGCCCGGTGACCGGAAATTGTTGCAGTCCGGGGCTCCGAATGCGGATGTGGTGGTGGCGAAGGATGGGTCTGGGAATTTTAAGACGGTGAAGGAGGCGGTCGCCGCCGCGAAGGGCGGCGGGAGGTTTGTGATATATGTGAAGGCCGGGGTTTATAGTGAGAATGTTGAGATTAATGCTAAGAATGTTATGTTGGTCGGCGACGGTATCGGAAAAACCGTTATCACCGGAAGTAGAAGTGTCGGCGGCGGTTCCACCACTTTTAGATCAGCCACCGTTGCCGTTGATGGAGACGGATTCATCGCACGTGACATAACCTTCAGAAACACCGCCGGAGCTTCAAACCACCAGGCGGTGGCGCTCCGGTCCGGCTCCGACCTCTCCGTCTTCTACCGCTGCGGCTTCGAAGGCTTTCAAGACACTCTCTACGTCTACGCCGAACGCCAATTCTACAAACAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGTCGTGATCCAAGATTGCAACATCATCGCCCGCGATCCTCCGAACAAGACCATCACTGTCACTGCCCAAGGCCGCTCGGATCCGAATCAGAACACCGGAATCTCGATCCACAATTGCAGAATCACGTCGGCCGGCGGCCTCAGCGGCGTCAAGGCCTTTTTAGGTCGGCCGTGGAGGCAGTATTCGAGAACTGTGATCATGAAATCGTCGATCGGAGGATTTATCAGTCCGGCTGGGTGGATGGAGTGGAGCGGTAATTTTGCCCTAAATACGCTGTACTACGGCGAGTATATGAATACCGGTCCGGGAGCTTCGACGGCGAATCGAGTGAAGTGGAAGGGTTATCGTGTGATTACCAGTGCGGCGGAGGCTTCGAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCGTGGTTGCCGAGCACCGGCGTGCCTTTCACATCCGGGCTTTGA 1542 54.86 MAAIRGHYSILVFVVLVVLIFPSAIFSYSEKEIKNWCSQTPYPAPCEDFLKTKSTTNKSPIATKSHFLKILVETALERAVSAHKTALSYGPKCRNGREKSAWTDCVELYDQIIKRLNRTADRCSSADAQTWLSAALTALETCRTGFEELGVSGFGYSLTANNVSKLISDGLSVNKPASPEAFDPPSMEDGFPTWVRPGDRKLLQSGAPNADVVVAKDGSGNFKTVKEAVAAAKGGGRFVIYVKAGVYSENVEINAKNVMLVGDGIGKTVITGSRSVGGGSTTFRSATVAVDGDGFIARDITFRNTAGASNHQAVALRSGSDLSVFYRCGFEGFQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVIQDCNIIARDPPNKTITVTAQGRSDPNQNTGISIHNCRITSAGGLSGVKAFLGRPWRQYSRTVIMKSSIGGFISPAGWMEWSGNFALNTLYYGEYMNTGPGASTANRVKWKGYRVITSAAEASKFTVGNFIAGGSWLPSTGVPFTSGL 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42510268 42515303 - Maker00031314 Lcy11g1878 647779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1878 513 FunFam Pectinesterase 205 513 - -
Lcy11g1878 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 174 IPR035513 -
Lcy11g1878 513 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Lcy11g1878 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 175 IPR035513 -
Lcy11g1878 513 Pfam Plant invertase/pectin methylesterase inhibitor 32 172 IPR006501 GO:0004857(InterPro)
Lcy11g1878 513 NCBIfam pectinesterase inhibitor domain 9 155 IPR006501 GO:0004857(InterPro)
Lcy11g1878 513 CDD PMEI-like_3 36 178 - -
Lcy11g1878 513 Gene3D - 206 513 IPR012334 -
Lcy11g1878 513 SMART PMEI_2 28 173 IPR006501 GO:0004857(InterPro)
Lcy11g1878 513 Pfam Pectinesterase 211 498 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy11g1878 513 SUPERFAMILY Pectin lyase-like 207 512 IPR011050 -
Lcy11g1878 513 PANTHER PECTINESTERASE 12 504 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1878 Lcy-Chr11:42510268 Lcy12g1385 Lcy-Chr12:31097205 2.15E-211 dispersed
Lcy11g1878 Lcy-Chr11:42510268 Lcy11g1879 Lcy-Chr11:42529645 6.97E-120 tandem
Lcy11g1878 Lcy-Chr11:42510268 Lcy6g0259 Lcy-Chr6:2255102 9.05E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1878 K01051 - csv:101217552 904.82