Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1879 ATGCCCTTCTCCTTCGCATCCTTCCTTCTCCTCTTCTCAGCCTTCATGGCTTCCTCTGTTTCTTCGTTCCGCGAGCCGAACCCGGTTCGGTTGGCTCAGACCGGAGTTGTTGAAGCAATCAACTCGGTTCGAAACTCCATAACCGGGATGGGTTATTTGAAACGACGGCGCTTTGAACATTTGAATGTGCAGGCCGCACTCGGCGATTGCACTAGGCTCTATGAGGAAGCCGAATTGAGACTCGCCGGGATGTTGGTTGGAGAGAATTATACGGCGGAAGATGCTCGGACGTGGCTTAGCGCCGCCGTGGCTAATCATCGAAGTTGTTTGGATGGCTTGGAAGAGGTCGGCGCTGCGGCGGTGGCGGTGGATGGGAATAACTTGACCGTGTTGCTCACCGGAGCTCTGCATTCATACGACAAGATTGCCGCCGTGGAGGAGCGGAACGGATGGGAACGAGCAAAGAAACAGAAATCGAGGAAAAACAGAGGAATCGACTTGGCGAAATGGAATCCGGAGACGTCGAAGCCGGACTATGTGGTGGCGAAGGACGGCTCCGGCACCCACACAACCATCAACGGCGCGGTGGCGGCTCTGGCGAGGAACGGCCGGAGACGGCAGTCGGAGAGAGTGGTTATATACGTGAAAGCCGGAGTTTACAAAGAGATTGTGGAAATCGGGATGCAGTTGAAGAACGTCATGGTTGTCGGCGACGGCGCAGACAAAACCATCGTCACCGGCAGCCGCAACGTGCCGGACGGCGCCACCACTTATAACTCAGCTACATTTGGCGTTTCCGGCGACGGGTTTTGGGCAAGAGACATAACATTCGAGAACACCGCCGGACCGGAAAAGCAACAGGCGGTGGCGCTACGACTAAATTCCGACCTCGCCGTCGTATACCGTTGCACAATCAAAGGCTATCAGGACACCCTCTTCCTGCACTCCCTCCGGCAATTCTACCGCGACTGCAAAATCTACGGTACCGTCGATTTCATCTTCGGCAACGCCGCCGCCGTCCTCCAAAACTGCGACATCTTCGTCCGACGGCCGATCCGCCACCAGGCCAACATGATCACCGCCCAAGGCCGCGACGATCTGGCCGAGCCCACTGGAATTTCGATCCTAAACTCCAGAGTCCGGCCGGCGCCGGATTTCGCCACCGGTAAGGCCGATTTCAAGACCTACCTTGGCCGGCCGTGGAAGCGATTCTCGAGGACGGTGGTTATGGCGACGGATTTGGACGGATTGATCGATCCGAGAGGGTGGGGAGAATGGAAGGGAGATTTTGCGATTTCGACTCTGTTTTATGCAGAGTTCAAGAACACTGGCGATGGCTCTTCGACGAGATTTAGGGTTAATTGGCCGGGATTTCATGTCCTCCGTAGCGTGGAGGATGCGCGGCGTTTCACGGTGGGTGAGTTTCTCCTCGGCGGCGCTTGGATTCCAGCCACTGGCGTGCCCTTCGAAGCGGGAGTTTGA 1482 56.61 MPFSFASFLLLFSAFMASSVSSFREPNPVRLAQTGVVEAINSVRNSITGMGYLKRRRFEHLNVQAALGDCTRLYEEAELRLAGMLVGENYTAEDARTWLSAAVANHRSCLDGLEEVGAAAVAVDGNNLTVLLTGALHSYDKIAAVEERNGWERAKKQKSRKNRGIDLAKWNPETSKPDYVVAKDGSGTHTTINGAVAALARNGRRRQSERVVIYVKAGVYKEIVEIGMQLKNVMVVGDGADKTIVTGSRNVPDGATTYNSATFGVSGDGFWARDITFENTAGPEKQQAVALRLNSDLAVVYRCTIKGYQDTLFLHSLRQFYRDCKIYGTVDFIFGNAAAVLQNCDIFVRRPIRHQANMITAQGRDDLAEPTGISILNSRVRPAPDFATGKADFKTYLGRPWKRFSRTVVMATDLDGLIDPRGWGEWKGDFAISTLFYAEFKNTGDGSSTRFRVNWPGFHVLRSVEDARRFTVGEFLLGGAWIPATGVPFEAGV 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42529645 42532492 + Maker00031634 Lcy11g1879 647780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1879 493 CDD PMEI-like_4 2 136 - -
Lcy11g1879 493 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 121 IPR035513 -
Lcy11g1879 493 PANTHER PECTINESTERASE 27 484 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy11g1879 493 Pfam Plant invertase/pectin methylesterase inhibitor 19 117 IPR006501 GO:0004857(InterPro)
Lcy11g1879 493 ProSitePatterns Pectinesterase signature 2. 326 335 IPR033131 -
Lcy11g1879 493 Pfam Pectinesterase 179 478 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy11g1879 493 SUPERFAMILY Pectin lyase-like 174 491 IPR011050 -
Lcy11g1879 493 SMART PMEI_2 4 138 IPR006501 GO:0004857(InterPro)
Lcy11g1879 493 Gene3D - 175 493 IPR012334 -
Lcy11g1879 493 Gene3D Invertase/pectin methylesterase inhibitor family protein 11 140 IPR035513 -
Lcy11g1879 493 FunFam Pectinesterase 172 493 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1879 Lcy-Chr11:42529645 Lcy6g0260 Lcy-Chr6:2261062 3.17E-136 dispersed
Lcy11g1878 Lcy-Chr11:42510268 Lcy11g1879 Lcy-Chr11:42529645 6.97E-120 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1879 K01051 - csv:101217635 743.036