Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1898 ATGGAAGAGAGAGAAGCCATAAGTTCAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTATCACGTGGCTCCGAGAACCGATAACCCGCCGCCGGCCAGCGGCGGCGGTTCGCCCACCGTCGCCGCCTCTCCGGTGAGCGTGGGGTTGCCCGGAAGTGGAACCGCAGGGAAAAAGAAACGAGGCAGACCTAGAAAATACGGCCCGGATGGAACGGTCACCATGGCATTGTCGCCATTGCCGCTTTCTTCCTCAGCTCCGGCGGCCGGCGGCTTTTCGATCACCAAGCGCGGGAAAGGCCGGCTCGGCGGCTCAGAGTTCAAGCATCACAAGAAAATGGGGATGGAATATATAGGTGAATGGAATGCGTGTTCTGTCGGTACAAATTTCATGCCTCATATCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGTCCTCGAGCAATCTGTATTCTTTCTGCGAATGGTGTAATTTCAAATGTCACACTTCGGCAACCCGATTCTTCAGGCGGTACTTTAACATATGAGGGTCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGAAAATCAAGGAACAAGAAGCAGGTCGGGTGGGATGAGTGTCTCCTTGGCAAGCCCCGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAAGTCCTGTACAGGTTGTGGTAGGGAGTTTTCTACCAACTAGCCAACAGGAGCAGAAAGTAAAGAAACAGAAACCCGAGTCGGTACCAGCTGCAGCCCCTGTTGCAGTCCCGAGCACGACACCAGCCACCACCGTGCCAACTTCCAATGCCGATACAGATGACAGTTTAAATGGCAACGGTCTGCAAAATCCCAGTTCCCTAAAACCAACTACATTCTCTCCTGCTGCTTTCCAGAGAGACAATTGGGGCGCCAATGCCGCCGTGCATTCCTTGCAGGAGCCGAGAAATACCGCTACCGACATCAACATATCGCTGCCAGGCTAA 1032 52.91 MEEREAISSGVTVIGAEAPSAYHVAPRTDNPPPASGGGSPTVAASPVSVGLPGSGTAGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACSVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPTSQQEQKVKKQKPESVPAAAPVAVPSTTPATTVPTSNADTDDSLNGNGLQNPSSLKPTTFSPAAFQRDNWGANAAVHSLQEPRNTATDINISLPG 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42676493 42682374 - Maker00032039 Lcy11g1898 647799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1898 343 ProSiteProfiles PPC domain profile profile. 128 268 IPR005175 -
Lcy11g1898 343 Gene3D - 133 262 - -
Lcy11g1898 343 CDD DUF296 133 246 IPR005175 -
Lcy11g1898 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 246 IPR005175 -
Lcy11g1898 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 11 293 IPR039605 GO:0003680(InterPro)
Lcy11g1898 343 MobiDBLite consensus disorder prediction 273 309 - -
Lcy11g1898 343 FunFam AT-hook motif nuclear-localized protein 1-like 133 263 - -
Lcy11g1898 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 131 252 - -
Lcy11g1898 343 MobiDBLite consensus disorder prediction 250 309 - -
Lcy11g1898 343 MobiDBLite consensus disorder prediction 20 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1898 Lcy-Chr11:42676493 Lcy12g1748 Lcy-Chr12:38272087 1.54E-104 dispersed
Lcy11g1898 Lcy-Chr11:42676493 Lcy11g1903 Lcy-Chr11:42746896 2.30E-20 proximal
Lcy11g1898 Lcy-Chr11:42676493 Lcy12g1745 Lcy-Chr12:38211174 1.08E-23 wgd
Lcy11g1898 Lcy-Chr11:42676493 Lcy6g0240 Lcy-Chr6:2114577 6.73E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1898 - - - 0.0