Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1899 ATGAGCTCAAGGCGCAGTGGCGGAGGTTGCACGGGAGGCAATGGAGGCAGCGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTCTGCCGGGGTGTATATTTGCACCGTACTTCGACTCTGAACAAGGCACAGCTCATTTTGCGGCTGTGCACAAGGTGTTTGGAGCCAGCAATGTGTCGAAGCTGCTTCTACATATTCCTGAACACAAGCGGCTCGACGCCGCTATAACTATATGCTACGAGGCACAAGCTCGAGTCAGAGAGCCGGTTTTTGGCTGTGTTGCTCATATCTTTGCTCTTCAACAACAGGCTGCGAGGTTGCGAGCAGAGCTCTCATACTTGCAAGCGTACCTAGCAACATCTGAGCTGCCAAGACCTGCACCCCATCCACTGGCACAGCCATCAGCTCAGATCAAGCCATCTATGCCCTCAATTGTAAGCCTTCCATCAGCTTGCCCTTCCTCGCCTGGTGTGTCAGATCTTTCGCTACTGCTTGATCCAGTGGAGCAAGCTTCACCGGAAAAATTGCAGTCTCCATTGGAATTTTATCAAATTGGAAGCAACAGTTTCCCATCCATGGGCAGCAGGGAACAACAACTTGTCCAAAAACAACTGTCCTCAATGCAATGCATTGGTACCTCGCTATTTCCGTACCATCCTAAACGAGCCTAA 678 51.62 MSSRRSGGGCTGGNGGSGPCGACKFLRRKCLPGCIFAPYFDSEQGTAHFAAVHKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLRAELSYLQAYLATSELPRPAPHPLAQPSAQIKPSMPSIVSLPSACPSSPGVSDLSLLLDPVEQASPEKLQSPLEFYQIGSNSFPSMGSREQQLVQKQLSSMQCIGTSLFPYHPKRA 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42713862 42714716 + Maker00031745 Lcy11g1899 647800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1899 225 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
Lcy11g1899 225 Pfam Lateral organ boundaries (LOB) domain 19 117 IPR004883 -
Lcy11g1899 225 PANTHER LOB DOMAIN CONTAINING PROTEIN 16 139 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1899 Lcy-Chr11:42713862 Lcy13g0596 Lcy-Chr13:7782883 4.54E-68 dispersed
Lcy3g1283 Lcy-Chr3:38744123 Lcy11g1899 Lcy-Chr11:42713862 6.03E-44 transposed
Lcy7g0903 Lcy-Chr7:9109038 Lcy11g1899 Lcy-Chr11:42713862 2.31E-41 transposed
Lcy11g1899 Lcy-Chr11:42713862 Lcy13g0594 Lcy-Chr13:7728177 1.58E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19169 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1899 K21994 - csv:101216934 338.961