Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1903 ATGGATCGAGCCACCGCCGCCCACGGCCGTCCACTTCCGCCGCCGTTCATTTCAAGAGACCTCCATCTCAATCCCCACCACCATGTCCTCCACCAAAATTCCGATCAACAACACAACGGCAATGGTAGCTCCGGCGGCGGTTCCGCCTTGGAACTCAAAGAGCTGAGCGGCGGCGCAACCGCAGACGGCGAGGTCTCGAGACGACCACGTGGCCGCCCTGCCGGGTCGAAGAACAAGCCGAAGCCGCCGATGATAATCACACGCGACAGCGCCAATGCTCTCCGGTGCCACGTCATCGAAATCGCCAACGCCAACGACGTGATCGAAACCCTCACGATTTTCGCACGTCAGCGCCAGCGTGGCATTTGCATTCTGACCGGCGCCGGAGCGGTCACCAACGTCACCCTCAAACAGCCGGCCTCGGCCGCCGGAGCGGTGATCGCTCTGCCAGGGAGATTCGAGATTCTTTCGCTGTCGGGGTCGTTTCTACCCCCGCCAGCGCCGCCGGCGGCGTCCGGGCTGACAGTGTATTTGTCGGGCGGGCAGGGGCAGGTGGTCGGAGGAAGCGTGGTGGGCCCACTTTTGAGTTCGGGGCCGGTGGTGATTACGGCGGCTTCGTTTGGAAACGCGGCGTACGAGAGGCTGCCGGTGGAGGACGATGAAGTGGCGGCGGCGACGGTGGCGGAGGCCGGAAGTAGTCCGATTCGTTCGCCGGAAACCGTCTTGCAACAGCAACAATTTTTGCCGGAACTTCATGGGATGGCGCCGAATCTAATGAACACGTGTCAATTGCCGACGGAACCCTACTGGGGCACAGGTCGTAGTACTCCGCCATTTTAG 840 62.14 MDRATAAHGRPLPPPFISRDLHLNPHHHVLHQNSDQQHNGNGSSGGGSALELKELSGGATADGEVSRRPRGRPAGSKNKPKPPMIITRDSANALRCHVIEIANANDVIETLTIFARQRQRGICILTGAGAVTNVTLKQPASAAGAVIALPGRFEILSLSGSFLPPPAPPAASGLTVYLSGGQGQVVGGSVVGPLLSSGPVVITAASFGNAAYERLPVEDDEVAAATVAEAGSSPIRSPETVLQQQQFLPELHGMAPNLMNTCQLPTEPYWGTGRSTPPF 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42746896 42747735 + Maker00031511 Lcy11g1903 647804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1903 279 MobiDBLite consensus disorder prediction 1 85 - -
Lcy11g1903 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 207 IPR005175 -
Lcy11g1903 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 222 - -
Lcy11g1903 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 41 232 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Lcy11g1903 279 Gene3D - 94 229 - -
Lcy11g1903 279 CDD DUF296 95 163 IPR005175 -
Lcy11g1903 279 FunFam AT-hook motif nuclear-localized protein 94 222 - -
Lcy11g1903 279 ProSiteProfiles PPC domain profile profile. 91 230 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1903 Lcy-Chr11:42746896 Lcy13g0601 Lcy-Chr13:7835251 1.65E-91 dispersed
Lcy11g1898 Lcy-Chr11:42676493 Lcy11g1903 Lcy-Chr11:42746896 2.30E-20 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1903 - - - 0.0