Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1908 TCTGTTACTTTGCACACAAATCTCGGAGACATCAAGTGCGAGATCTTCTGCGATGAAGTCCCGAAGGCTGCCGAGGCAAGTTCATCGCTGGTCTCTTCTAATTTTTTGGCACTATGTGCTACTGGTTACTATGATGGAACCATATTCCACCGAAATATCAAAGGTTTCATGATACAAGGTGGAGATCCAACAGGCACGGGAAAAGGGGGAACCAGCATATGGGGCAAAAAGTTCAATGACGAGATAAGAGAATCACTCAAGCACAATGCAAGAGGGATATTATCAATGGCTAATAGTGGAGCAAATACAAATGGGAGCCAATTTTTTATAACTTATGCAAAGCAGCCACATCTGAATGGATTATACACCGTGTTCGGTAGAGTGATTCATGGGTTTGAAGTACTTGATATCATGGAAAAGACTCAAACTGGACCGGGAGATCGTCCTCTTGCGGAGATCAGGCTCAATCGGGTGACGATACATGCTAATCCTCTTGCAGGCTAA 504 44.05 SVTLHTNLGDIKCEIFCDEVPKAAEASSSLVSSNFLALCATGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42798551 42801347 - Maker00031257 Lcy11g1908 647809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1908 167 Gene3D - 1 167 IPR029000 -
Lcy11g1908 167 FunFam Peptidyl-prolyl cis-trans isomerase 1 167 - -
Lcy11g1908 167 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 1 157 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Lcy11g1908 167 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 160 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy11g1908 167 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 2 159 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy11g1908 167 CDD Cyclophilin_PPIL3_like 1 160 - -
Lcy11g1908 167 PIRSF Peptidylpro_ismrse 1 164 IPR024936 GO:0003755(InterPro)
Lcy11g1908 167 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 44 61 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Lcy11g1908 167 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 49 61 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy11g1908 167 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy11g1908 167 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 119 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy11g1908 167 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 135 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy11g1908 167 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy11g1908 167 SUPERFAMILY Cyclophilin-like 2 164 IPR029000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1908 Lcy-Chr11:42798551 Lcy1g0914 Lcy-Chr1:7966590 3.23E-56 dispersed
Lcy11g1908 Lcy-Chr11:42798551 Lcy3g1104 Lcy-Chr3:35947297 3.48E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1908 K12734 - csv:101211474 315.079