Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1909 ATGGAGACCAATCTCGCCGCCGCCGCCGTCGATAGCAACACCACAAACATCCCGCCAGAGAAACGGAGCCGTTCCATCTTCGACGTCGCACCAGACTTCTTCGATTTCTGCAAACTCATTCGTTCTCCACACGCATACACCTCATCAACCAGCGGCAGCTACAGGGACAGCGCAAGCGCAGAAAATCCAGTCGATTCGGAGCAGAACTCTAGGGATTTCAAAGAAAGTTCCGTCGCCCACAGATGGACCTGCAACACATGTAAGGCCGAGTTCGAGTCCCTGCTCGACCAGCGTTCGCACTTCAAATCCGACCTACACCGGTTCAATGTGAAACTAAGCATTGCTGGAAAGAATATTGTGAAGGAGGATGATTTTGATGAGCTGACATCTGATTCTTTCAGAGACTATGATGTGTCAAGTATTTCTGGATCAGAGGATGAAACAGAGAAGGAGATTTACTCTCGGAATGAAGGGTCTAAGGGAACGAGTGAGAATGTGAACAAGAAGAGGTTGTTTGTTCATCTTCAAACAGGTGAAAGAGTTTCGGTTTGGAAGTGTTTGCTCATAAATGAGTCAGATAATATTTCGTATGAAGATGATAAAACATCAGTCAGTGGTAATGGCTTTCATGCGCAGTACCTTAGAGAGAATGAAGTCATAGCAAGATTAAAATATTTAAATCATGAGCCAAGAGATGGCACCCGTTTGCGGATAGTGTTGCTTGCAAGTGGTGGGCACTTTGCCGGTTGTGTTTTTGACGGGAACTTGGTTGTAGCTCATAAAACCTTTCACAGATATGTGGTGAGAGCCAAATCTGGAAAGAAGCAATCATCGAAAGATGCAAGTGGCAAATCAATCAGTTCTGCTGGGGCTTCACTTCGTCGTCATAATGAACAGGCGTTGAAGAAGGAAATTCAAGATCTCCTTGCTGCTTGGAAGTCCTATTTTAATGCTTCATCTTGTGTTTATATTTATGCTCCTTCAAACAACCGGCAATTGCTTTTTAATGGGGACAAGCCATATTTTAGTGATCAGCACTCTGCTGTTCGGAATATTCCTTTGACTGTTCGAAGGCCTACATTGAAAGAAGCCCGACGTGTTTATGAACAATTGGTTCAGATAGTCTATGAAGTAGATGAGAAGGAAGTATTGTCCACCAGTGAGCACGATTCACTGTTAAGTGCAGTTACAACAGACAATAGCACCCAAAATATAAGTGAAAAGAAAGCCATTGGAGACCTGGAAAAGGGTGCTTCTACACATGTTGAAGAATCTGTTGAACACCCCGTAGGTAGTGAGAATGAAAGTGAAGTTATTTGTAGAACTACACCTTTGCATGAAGCATCACAATCTGGAAATGCAGATAAGGTTTTGGAACTCCTTGAACAGGGTCTTGATCCTTGCATCAAAGACGAAAGAGGACGTACTCCTTACATGCTAGCAACTGAGAAGGAAGTCCGAAATAACTTTAGAAGGTTCATGGCTTCAAACCTTGATAAGTGGGATTGGAATGCTGCTAAGGTGCCCAGCGCATTAACTAAGGAAATGGAGGAATCTCAAGCTGCTAAGCAGGTTACTTACTGTTTTTCCTGCTGTTCAGTCGTGATTCCATATAGTGTAGATGCACTTATCTTGTGTTTTTGCTTCTCCTACTTGGATTACCTGAAGAAGTCCTCCTGTGCTGTTGAAACTGATTGGCATTCTATTCTCGCCGAAAAAGATGCCAAGCGAAAGGCAAGAGCGAAGGAATTGAAGAAATTAAAGAAAGAAAAGGCTAAGAAAGCACAGGCTGAGGCTGCTGAATCTCAAAAGGCGGTGAAGGTGGAACAGAGCAGAGGAATTGGCTCTATTTTGAATTCTCGGGCTGAATCAACCAGTGGAAAACTGATTACCAGAGAGGTAACCATCAAGCTGTTTGAATTGAACAAGCAAGAGGCTGGCCTACATGTTCCGTTTCATACTTCGACCGAGAATCACATATCTTTTGATTATTTAGCAATACCTTCTCTTATTCCTTTTCTCCCTTGGGAGGAACTACAGATGAAACAGGCAGCTGAACGGGAAAAGAGAGCAGCAGCTGCTGAGAAGAGAATCGCAGCTATGGCCGCAGCTGCAGCCACCAACGGTTCCTCGTCAACTACTCCGAACAGTTCACAGACTAAAACCGGGTTAGCGGGGGATGTCAACTGTTCCTGTTGCGGTACATCGCTGGCCGGTAAAGTTCCTTTCCACTGGTACAACTACAAATATTGCAGCTCAACATGCATGCACGTACACAAAGAGGTCCTCGAAGAAAACTAG 2301 44.29 METNLAAAAVDSNTTNIPPEKRSRSIFDVAPDFFDFCKLIRSPHAYTSSTSGSYRDSASAENPVDSEQNSRDFKESSVAHRWTCNTCKAEFESLLDQRSHFKSDLHRFNVKLSIAGKNIVKEDDFDELTSDSFRDYDVSSISGSEDETEKEIYSRNEGSKGTSENVNKKRLFVHLQTGERVSVWKCLLINESDNISYEDDKTSVSGNGFHAQYLRENEVIARLKYLNHEPRDGTRLRIVLLASGGHFAGCVFDGNLVVAHKTFHRYVVRAKSGKKQSSKDASGKSISSAGASLRRHNEQALKKEIQDLLAAWKSYFNASSCVYIYAPSNNRQLLFNGDKPYFSDQHSAVRNIPLTVRRPTLKEARRVYEQLVQIVYEVDEKEVLSTSEHDSLLSAVTTDNSTQNISEKKAIGDLEKGASTHVEESVEHPVGSENESEVICRTTPLHEASQSGNADKVLELLEQGLDPCIKDERGRTPYMLATEKEVRNNFRRFMASNLDKWDWNAAKVPSALTKEMEESQAAKQVTYCFSCCSVVIPYSVDALILCFCFSYLDYLKKSSCAVETDWHSILAEKDAKRKARAKELKKLKKEKAKKAQAEAAESQKAVKVEQSRGIGSILNSRAESTSGKLITREVTIKLFELNKQEAGLHVPFHTSTENHISFDYLAIPSLIPFLPWEELQMKQAAEREKRAAAAEKRIAAMAAAAATNGSSSTTPNSSQTKTGLAGDVNCSCCGTSLAGKVPFHWYNYKYCSSTCMHVHKEVLEEN 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42802858 42808546 - Maker00031570 Lcy11g1909 647810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1909 766 MobiDBLite consensus disorder prediction 1 21 - -
Lcy11g1909 766 Pfam Vms1-associating treble clef domain 729 762 IPR041540 -
Lcy11g1909 766 SUPERFAMILY Ankyrin repeat 442 494 IPR036770 -
Lcy11g1909 766 MobiDBLite consensus disorder prediction 46 72 - -
Lcy11g1909 766 Coils Coil 570 612 - -
Lcy11g1909 766 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 20 765 IPR047139 GO:0030433(PANTHER)
Lcy11g1909 766 MobiDBLite consensus disorder prediction 139 163 - -
Lcy11g1909 766 ProSiteProfiles Ankyrin repeat profile. 440 472 IPR002110 GO:0005515(InterPro)
Lcy11g1909 766 Pfam Bacteroidetes VLRF1 release factor 238 374 IPR041175 -
Lcy11g1909 766 ProSitePatterns Zinc finger C2H2 type domain signature. 84 106 IPR013087 -
Lcy11g1909 766 Gene3D - 397 510 IPR036770 -
Lcy11g1909 766 MobiDBLite consensus disorder prediction 140 157 - -
Lcy11g1909 766 ProSiteProfiles Ankyrin repeat region circular profile. 440 472 - -
Lcy11g1909 766 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1909 Lcy-Chr11:42802858 Lcy2g1339 Lcy-Chr2:15052718 2.59E-94 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1909 K26089 - csv:101216211 892.108