Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy11g1911 | ATGCAAATGAGCATCAATATCTTCACCGCCTTTTCCTTCATACTATTCATTATCTCCCTCTTCTTTCTCTTCATCTTAATTCTCCTCCTTCGAACCTTCGCCGGAAAATCCATAACAAAATCCAACTACTCGCCAGTGTACGGCACCGTCTACGGCCTGGCCTTCCACTTCAACAACTTCTACGATCATCTAACGGCGGTGGCGAAGCGGCAACAAACCTTCCGGCTGCTTGCGTCGGCGCACAGCGAAATATACACGGTCGATCCGAGAAACATCGAGCACACACTGAAGACGAAGTTCGACAAGTACTCGAAAGGAAGCAAAGATCAAGAAATCTTAGGGGATCTGTTTGGAGAGGGGATTTTTGCAGTGGATGGAGAGAAGTGGAAGCAGCAGAGGAAATTGGCGAGCTATGAATTCTCGACGAGGGTTCTTAGGGATTTTAGCTGCTCTGTTTTCAGACAAAATGCTGCTAAACTTGTTGGAGTTCTTTCGGAGTTTTCCAGCACGGATCGGGTTTTCGATATCCAGGATTTGCTAATGCGATGTTCTTTGGACTCCATTTTCAAAGTTGGGTTCGGCGTGGATTTAGGTTGCTTGGAGGAACCAAGCAAAGCAGGGAGCAGCTTCATGAAGGCCTTTGATGATTCTAACGCTCAGGTTTTTTGGCGCTACTTCGATCCTTTTTGGAAATTGAAAAGATTTCTCAATATCGGTTCCGAAGCTTCATTTAGGAACAACGTAAAAATTGTCAATGCTTTTGTGCACCAGTTGATCAGTGACAGGAGAAAATTGCTTCAGCAACCAAATCTCAAGAATGACAAAGAGGACATACTTTCGAGGTTTCTGATGGAAAGTGAGAAGGATCCAATAAGAATGAATGATCAATATCTAAAAGATATAGTCCTGAATTTCATGTTGGCTGGCAGGGATACAAGTGCAGGAACTCTGTCTTGGTTCTTCTACATGCTCTGCAAGAACCCTTTAATACAGGAAAAAGTTGCAGAAGAAGTGAGACAAATTGTTGGGGTTCAAGGGGAAGAAGCTGATATAAATTTGTTCGTACAGAACTTGACTGATTCAGCTCTCGACAAAATGCATTATCTTCATGCAGCATTGGCAGAGACTCTAAGGCTCTATCCTGCAGTCCCTGTGGATGGAAGGACTGCAGAAATTGATGACATCCTTCCTGATGGATACAAAGTAACAAAAGGGGATGGAGTAAACTACTTGGCCTATTCCATGGGCAGGATGCCCTGTCTTTGGGGAGAAGATGCTGAAGATTTTAAGCCTGAGAGATGGCTTGAAAATGGAAATTTTCAACCCGAATCGCCTTTCAAATTCATCGCATTTCATGCGGGTCCTCGAATGTGTTTGGGAAAGGATTTTGCTTACCGACAAATGAAGATAGTATCTGCTGCACTGCTTCAATTTTTTCGATTCAAATTAGCTGATCCAACCAGAAATGTTCGACTCGGTATAAGAATTCAAATTCATTCCGTTCGAATTTCCATCCAACGTCCCCAATTCCCTCCCTTTGCTCTCTCCCCACATTTCTTGCTATCGGAGTGCGACAGTGGCGAACCGATGAAATCTCTGGCAAAGGACGAAATTGAAACTCCGAAGCGGCAATGGTCCTTGCAAGATTTCGACGTAGGCAAGCCCCTCGGCAAAGGAAAATTCGGCAGAGTTTATCTTGCCAGAGAAGTCAAGGAGCTCCAATTTGATTTTCAGAGCAAGTATATAGTGGCACTGAAGGTGATTTTCAAGGAGCAGATGGAGAAGTACAGGATTCACCATCAGTTAAGGAGAGAGATGGAGATACAGACCAGTCTTCGACATCCGAACATCCTACGCCTCTATGGATGGTTTCATGATGCTGAACGGATTTTCTTGATATTGGAATACGCTCACCGCGGTGAGCTTTATAGGGAGCTTAGGAAAAGTGGTCATCTCAGCGAGAAGCAAGCTGCCACTTACATTTTAAGCCTCACACAAGCACTGGCATACTGCCATGAGAAGCATGTGATTCACAGGGACATTAAGCCAGAAAACTTGTTACTCGATCATGAGGGCCGGTTGAAAATTGCAGATTTTGGTTGGTCCGTACAGTCAAGAAGCAAGAGACGTACCATGTGTGGAACTCTGGATTATTTAGCCCCAGAAATGGTGGAGAATAAAGCTCATGACTATACAGTAGATAATTGGACTTTGGGCATCCTTTGCTATGAGTTCCTTTATGGAGTGCCTCCATTTGAAGCCGAAAGTCAAAGTGACACCTTTAAAAGGATAATGGAGGTTGACTTGAATTTTCCCTTGACCCCTAATGTTTCCCCAGAAGCAAAAGATCTAATTGGCCGGCTCTTGGTGAAGGATTCCTCTGGAAGACTTTCACTTCAGAAGATAGTGGAGCATCCTTGGATAATCAAGAATGCAGATCCATCTGGTATTTGCAATACTAGGTAG | 2466 | 44.04 | MQMSINIFTAFSFILFIISLFFLFILILLLRTFAGKSITKSNYSPVYGTVYGLAFHFNNFYDHLTAVAKRQQTFRLLASAHSEIYTVDPRNIEHTLKTKFDKYSKGSKDQEILGDLFGEGIFAVDGEKWKQQRKLASYEFSTRVLRDFSCSVFRQNAAKLVGVLSEFSSTDRVFDIQDLLMRCSLDSIFKVGFGVDLGCLEEPSKAGSSFMKAFDDSNAQVFWRYFDPFWKLKRFLNIGSEASFRNNVKIVNAFVHQLISDRRKLLQQPNLKNDKEDILSRFLMESEKDPIRMNDQYLKDIVLNFMLAGRDTSAGTLSWFFYMLCKNPLIQEKVAEEVRQIVGVQGEEADINLFVQNLTDSALDKMHYLHAALAETLRLYPAVPVDGRTAEIDDILPDGYKVTKGDGVNYLAYSMGRMPCLWGEDAEDFKPERWLENGNFQPESPFKFIAFHAGPRMCLGKDFAYRQMKIVSAALLQFFRFKLADPTRNVRLGIRIQIHSVRISIQRPQFPPFALSPHFLLSECDSGEPMKSLAKDEIETPKRQWSLQDFDVGKPLGKGKFGRVYLAREVKELQFDFQSKYIVALKVIFKEQMEKYRIHHQLRREMEIQTSLRHPNILRLYGWFHDAERIFLILEYAHRGELYRELRKSGHLSEKQAATYILSLTQALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRRTMCGTLDYLAPEMVENKAHDYTVDNWTLGILCYEFLYGVPPFEAESQSDTFKRIMEVDLNFPLTPNVSPEAKDLIGRLLVKDSSGRLSLQKIVEHPWIIKNADPSGICNTR | 821 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 42815816 | 42826661 | - | Maker00031697 | Lcy11g1911 | 647812 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy11g1911 | 821 | Gene3D | Phosphorylase Kinase; domain 1 | 538 | 640 | - | - | |
| Lcy11g1911 | 821 | PRINTS | E-class P450 group I signature | 370 | 388 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1911 | 821 | PRINTS | E-class P450 group I signature | 448 | 458 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1911 | 821 | PRINTS | E-class P450 group I signature | 317 | 343 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1911 | 821 | PRINTS | E-class P450 group I signature | 297 | 314 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1911 | 821 | PRINTS | E-class P450 group I signature | 458 | 481 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1911 | 821 | SUPERFAMILY | Cytochrome P450 | 43 | 488 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1911 | 821 | ProSiteProfiles | Protein kinase domain profile. | 550 | 808 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy11g1911 | 821 | Pfam | Cytochrome P450 | 47 | 485 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1911 | 821 | SMART | serkin_6 | 550 | 808 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy11g1911 | 821 | FunFam | Serine/threonine-protein kinase ark1 | 542 | 820 | - | - | |
| Lcy11g1911 | 821 | ProSitePatterns | Protein kinases ATP-binding region signature. | 556 | 586 | IPR017441 | GO:0005524(InterPro) | |
| Lcy11g1911 | 821 | Pfam | Protein kinase domain | 551 | 808 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy11g1911 | 821 | PANTHER | CYTOCHROME P450 | 25 | 486 | - | - | |
| Lcy11g1911 | 821 | CDD | STKc_Aurora | 549 | 808 | - | - | |
| Lcy11g1911 | 821 | Gene3D | Cytochrome P450 | 38 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1911 | 821 | SUPERFAMILY | Protein kinase-like (PK-like) | 540 | 812 | IPR011009 | - | |
| Lcy11g1911 | 821 | FunFam | Aurora kinase A | 542 | 640 | - | - | |
| Lcy11g1911 | 821 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 676 | 688 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy11g1911 | 821 | Gene3D | Transferase(Phosphotransferase) domain 1 | 641 | 817 | - | - | |
| Lcy11g1911 | 821 | CDD | CYP86A | 72 | 486 | - | - | |
| Lcy11g1911 | 821 | PRINTS | P450 superfamily signature | 449 | 458 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1911 | 821 | PRINTS | P450 superfamily signature | 458 | 469 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1911 | 821 | PRINTS | P450 superfamily signature | 371 | 382 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1911 | 821 | PRINTS | P450 superfamily signature | 308 | 325 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1911 | 821 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 451 | 460 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g1911 | Lcy-Chr11:42815816 | Lcy11g1915 | Lcy-Chr11:42890679 | 4.78E-161 | dispersed | |
| Lcy5g2610 | Lcy-Chr5:48793434 | Lcy11g1911 | Lcy-Chr11:42815816 | 3.39E-11 | dispersed | |
| Lcy11g1911 | Lcy-Chr11:42815816 | Lcy11g1912 | Lcy-Chr11:42827593 | 0.00E+00 | tandem | |
| Lcy8g1155 | Lcy-Chr8:37907442 | Lcy11g1911 | Lcy-Chr11:42815816 | 8.13E-65 | transposed | |
| Lcy9g1638 | Lcy-Chr9:41528812 | Lcy11g1911 | Lcy-Chr11:42815816 | 1.24E-121 | transposed | |
| Lcy11g1911 | Lcy-Chr11:42815816 | Lcy12g1730 | Lcy-Chr12:38031963 | 1.52E-29 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 65476 | None | None | None | None | Lcy | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy11g1911 | - | - | - | 0.0 |