Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy11g1912 | ATGATCGTACTCTCGACTTCTGAATCCATCTTCTTCAGCCAAAAAATCCCCAAAAATTTCTCAAAGAATATCTCCCGCTTCGTGATTCTCTCATCCAATCATTGCGATTCAGCCATGGAAGTGAATTTCAACATCTTCACCGTCGTTTCCATCGCACTACTCACAGTCTCCCTCTTCCTTCTGTCCTTGTTCATTCTCCTCCTCCGAACCCTCGCCGGAAAATCCATTACAAGCTCCGACTACTCCCCGGTGTACGGCACCACCTACGGCCAGGCATTCTACTTCAACAACCTCTACGATCATCTAACGGCGGTGGCGAAGCGGCACCGAACGTTCCGGCTGCTCGCGTCGGCGTACAGCGAGATATACACGGTCGATCCGAGAAACGTCGAGCACGTATTGAAGACGAAATTCGACAAGTACCCGAAAGGAAGCAAAGATCAAGAACTCTGCGGGGATCTGTTTGGAGAGGGAATATTTGCGGTGGATGGAGAGAAGTGGAAGCAGCAGAGGAAATTGGCGAGCTATGAATTCTCGACGAGGGTTCTTAGGGATTTTAGCTGCTCTGTTTTCAGACGAAATGCTGCTAAACTTGTTGGACTTCTTTCCCAGCTTTCCACCTCGGGTCGGGTTTTTGATATCCAGGATTTGCTAATGCGATGCTCTTTGGACTCCATTTTCAAAGTCGGGTTCGGCGTGGATTTAGATTGCTTGGAGGAACCAAGCAAAGCTGGGAGCGGCTTCATGAAGGCCTTCGATGATTCTAGCGCTCAGGTTTTTTGGCGCTATATCGATCCTTTTTGGAAATTGAAGAGATTTCTCAACATCGGTTCCGAAGCTTCGTTTAGGAACAACGTAAAAGTAATCGATGCTTTTGTGCACCAGTTGATCAGTGACAGGAGAAAATTGCTTCAGCAACCAAATCTCCACTGTTCTTTATCTCAACTTGATTTTGCTGTTCTTACTGGAGTAAAAGAGATCATTTCTTCGTTGAATTTTGTTTTGAACTTGAAGAAGAATGACAAAGAGGACATACTTTCGAGGTTTCTAATGGAAAGTGAGAAGGATCCAACAAGAATGAATGATCGATATCTGAGAGATATAGTTCTTAATTTCATGTTGGCTGGCAAGGATACAAGTGCAGGAACTCTGTCTTGGTTCTTCTACATGCTATGCAAGAACCCCTTAATACAGGAAAAAGTTGCAGAAGAAGTGAGACAAATTGTTGGGGTTCAAGGGGAAGAAACTGATATAAATTTGTTCGTACAGAACTTAACTGATTCAGCTCTCGACAAAATGCATTATCTTCATGCAGCACTGGCAGAGACTCTAAGGCTGTATCCTGCTGTCCCTGTGGATGGAAGGACTGCAGAAATAGATGACATTCTTCCTAATGGCCATAAACTAAGAAAAGGGGACAGTGTGTACTACTTGGCCTATTCCATGGGCAGGATGCCCTGCCTTTGGGGAGAAGATGCTGAAGATTTTAAACCTGAGAGATGGCTTGAAAATGGAACTTTTCGACCCGAATCGCCTTTCAAATTCATCGCATTTCATGCGGGTCCTCGAATGTGTTTGGGAAAGGATTTTGCTTATCGACAAATGAAGATAGTATCTGCTGCTCTGCTTCAATTTTTTCGATTCAAATTAGCTGATCCGACTAGAAATATAACTTATAGGATCATGCTCACCCTCCACATCGATGGAGGTCTCCCACTTGTTGCAATTCCAAGAATAAGAAAATTGCACTATGTATTGTAA | 1761 | 44.12 | MIVLSTSESIFFSQKIPKNFSKNISRFVILSSNHCDSAMEVNFNIFTVVSIALLTVSLFLLSLFILLLRTLAGKSITSSDYSPVYGTTYGQAFYFNNLYDHLTAVAKRHRTFRLLASAYSEIYTVDPRNVEHVLKTKFDKYPKGSKDQELCGDLFGEGIFAVDGEKWKQQRKLASYEFSTRVLRDFSCSVFRRNAAKLVGLLSQLSTSGRVFDIQDLLMRCSLDSIFKVGFGVDLDCLEEPSKAGSGFMKAFDDSSAQVFWRYIDPFWKLKRFLNIGSEASFRNNVKVIDAFVHQLISDRRKLLQQPNLHCSLSQLDFAVLTGVKEIISSLNFVLNLKKNDKEDILSRFLMESEKDPTRMNDRYLRDIVLNFMLAGKDTSAGTLSWFFYMLCKNPLIQEKVAEEVRQIVGVQGEETDINLFVQNLTDSALDKMHYLHAALAETLRLYPAVPVDGRTAEIDDILPNGHKLRKGDSVYYLAYSMGRMPCLWGEDAEDFKPERWLENGTFRPESPFKFIAFHAGPRMCLGKDFAYRQMKIVSAALLQFFRFKLADPTRNITYRIMLTLHIDGGLPLVAIPRIRKLHYVL | 586 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 42827593 | 42832215 | - | Maker00031830 | Lcy11g1912 | 647813 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy11g1912 | 586 | PANTHER | CYTOCHROME P450 | 64 | 571 | - | - | |
| Lcy11g1912 | 586 | PRINTS | E-class P450 group I signature | 384 | 410 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1912 | 586 | PRINTS | E-class P450 group I signature | 525 | 548 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1912 | 586 | PRINTS | E-class P450 group I signature | 364 | 381 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1912 | 586 | PRINTS | E-class P450 group I signature | 437 | 455 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1912 | 586 | PRINTS | E-class P450 group I signature | 515 | 525 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1912 | 586 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 518 | 527 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy11g1912 | 586 | SUPERFAMILY | Cytochrome P450 | 91 | 578 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1912 | 586 | Pfam | Cytochrome P450 | 95 | 554 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1912 | 586 | CDD | CYP86A | 110 | 571 | - | - | |
| Lcy11g1912 | 586 | Gene3D | Cytochrome P450 | 90 | 578 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1912 | 586 | PRINTS | P450 superfamily signature | 438 | 449 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1912 | 586 | PRINTS | P450 superfamily signature | 375 | 392 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1912 | 586 | PRINTS | P450 superfamily signature | 525 | 536 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1912 | 586 | PRINTS | P450 superfamily signature | 516 | 525 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g1912 | Lcy-Chr11:42827593 | Lcy13g1061 | Lcy-Chr13:23713799 | 1.50E-123 | dispersed | |
| Lcy11g1912 | Lcy-Chr11:42827593 | Lcy11g1915 | Lcy-Chr11:42890679 | 2.17E-171 | proximal | |
| Lcy11g1911 | Lcy-Chr11:42815816 | Lcy11g1912 | Lcy-Chr11:42827593 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy11g1912 | - | - | - | 0.0 |