Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy11g1915 | ATGATCGCTGTGAAATTTCTCTCAAACCCCATTTCAGTTGCAGCTCTATTGCTACTGATTTCCATTGTTGTAAGGCAGATTCTCAATGGAAAATCGAGGAGAAAGAAATATCATCCAATTGCAGGAACTGTATTTCACCAACTCCTCAATTTCCATCGATTGCATGATTATATGACTGATCTTGCTAGAAAGTATAAAACATATCGGCTTCTTGGTCCTTTCAGAAATGAGATTTACACTTCAGACCCACCAAATGTTGAGTATATACTCAGAACAAACTTCGAGAATTTTGGAAAGGGGTCACATAACCACAGAATTCTCAAGGATCTTCTTGGTGATGGAATTTTCACCGTTGATGGTGAGAAGTGGCGTCAGCAGAGGAAGATTTCAAGCTATGAGTTCTCTACAAAAGTTCTGAGGGATTTTAGCAGTGTCATATTCCAGAAATCTGCTGTTAAACTAGTTCATATCGTGTCCGAAGCTGCTATTTCAAATCGAGTAATTGATATTCAAGATCTCTTTATGAAAACAACTCTAGATTCAATTTTTCATGTATCATTTGGAATTGATCTGGATAGCTTGCATGGATCAAATGAAGAAATAAACAGGTTTTGCTCTGCTTTTGAAGCATCAAGTACAATGACACTCTGGCGATATGTTGATGTAATCTGGCCAATCAAGAAGATTCTGAATATTGGGTCTGAAGCTACCTTGAAAAAAAACATGAAAATTGTTGATGAGTACATATATAAGCTCATTCACAACGCACTCGAACAGCGACAGAAGTTAGGCGAGGACACTTTGATGACAAAAGATAACATAGTGTCGAGGTTTCTGCAAGCGGAAAAGACCAACCCGACGTATCTAAGAGATATTATTCTTAATTTTGTCATAGCTGGAAAGGACACAACAGCAGTTACACTTGCTTGGTTCATGTACGTGCTTTGCAAGCATCCTGACGTGCAGGAAAGAGTTGCTAGAGAGATCAAGGAAGTGACAAATGTTGAAGATGTTAACAATTTTGCAGAGTTTGCTGCAAGATTGACTGAAGAAGCTCTAGAGAAGATGCAGTTTCTCACTGCAACTATTAATGAAACTCTTAGACTCTATCCTGCTGTTCCAGTGGATGCAAAGATTTGCTTTTCTGACGATACATTGCCAGATGGATTCAGTGTGAGAAAAGGAGATATGGTGTCATACCAGCCATATGCAATGGGTAGAATGAAATTCATATGGGGTGAAGATGCCGAGGAATTCCGACCAGAGAGATGGTTTGATGAAGATGGAAATTTCCAGCCTCAGAGCCCTTTCAAATTTACAGCCTTTCAGGCAGGGCCACGCATTTGTCTGGGAAGAGACTTTGCTTACAGGCAGATGAAGATCCTCTCATCTCTATTATTGGTCTTTTTTAATTTCAAAATGAGTGATGAGAAGAAAATTGTTAAGTATCAACCAATGATCAATCTTCTCATAGATGGAGGCCTACAAGTTTGTGCCTTTCCAAGACCTCGTAAGTAG | 1518 | 39.13 | MIAVKFLSNPISVAALLLLISIVVRQILNGKSRRKKYHPIAGTVFHQLLNFHRLHDYMTDLARKYKTYRLLGPFRNEIYTSDPPNVEYILRTNFENFGKGSHNHRILKDLLGDGIFTVDGEKWRQQRKISSYEFSTKVLRDFSSVIFQKSAVKLVHIVSEAAISNRVIDIQDLFMKTTLDSIFHVSFGIDLDSLHGSNEEINRFCSAFEASSTMTLWRYVDVIWPIKKILNIGSEATLKKNMKIVDEYIYKLIHNALEQRQKLGEDTLMTKDNIVSRFLQAEKTNPTYLRDIILNFVIAGKDTTAVTLAWFMYVLCKHPDVQERVAREIKEVTNVEDVNNFAEFAARLTEEALEKMQFLTATINETLRLYPAVPVDAKICFSDDTLPDGFSVRKGDMVSYQPYAMGRMKFIWGEDAEEFRPERWFDEDGNFQPQSPFKFTAFQAGPRICLGRDFAYRQMKILSSLLLVFFNFKMSDEKKIVKYQPMINLLIDGGLQVCAFPRPRK | 505 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 42890679 | 42895430 | - | Maker00031521 | Lcy11g1915 | 647816 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy11g1915 | 505 | PRINTS | E-class P450 group I signature | 360 | 378 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1915 | 505 | PRINTS | E-class P450 group I signature | 439 | 449 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1915 | 505 | PRINTS | E-class P450 group I signature | 308 | 334 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1915 | 505 | PRINTS | E-class P450 group I signature | 449 | 472 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1915 | 505 | PRINTS | E-class P450 group I signature | 288 | 305 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1915 | 505 | CDD | CYP86A | 66 | 495 | - | - | |
| Lcy11g1915 | 505 | PRINTS | P450 superfamily signature | 361 | 372 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1915 | 505 | PRINTS | P450 superfamily signature | 440 | 449 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1915 | 505 | PRINTS | P450 superfamily signature | 449 | 460 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1915 | 505 | PRINTS | P450 superfamily signature | 299 | 316 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1915 | 505 | SUPERFAMILY | Cytochrome P450 | 36 | 502 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1915 | 505 | Gene3D | Cytochrome P450 | 30 | 499 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy11g1915 | 505 | PANTHER | CYTOCHROME P450 | 22 | 495 | - | - | |
| Lcy11g1915 | 505 | Pfam | Cytochrome P450 | 38 | 486 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g1911 | Lcy-Chr11:42815816 | Lcy11g1915 | Lcy-Chr11:42890679 | 4.78E-161 | dispersed | |
| Lcy11g1915 | Lcy-Chr11:42890679 | Lcy13g1061 | Lcy-Chr13:23713799 | 3.09E-130 | dispersed | |
| Lcy11g1912 | Lcy-Chr11:42827593 | Lcy11g1915 | Lcy-Chr11:42890679 | 2.17E-171 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy11g1915 | - | - | - | 0.0 |