Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1921 ATGGTGAGAGGAAAAACTCAGATGAGGAGAATCGAGAACGCGACGAGTCGGCAAGTGACGTTTTCTAAGCGGCGCAATGGGCTGCTGAAGAAGGCCTTTGAGCTCTCGGTTCTCTGCGAAGCTGAAGTCGCTCTTATCATTTTCTCTTCCAGAGGAAAGCTTTATGAATTTGCAAGCTCCAGCATGCAGGCCACAGTGGGGCGATTTCTAAGGCATACAAGGGAAACCAGTCATCTTGAACGTCCTTTAGCTCCTTGCCACAATTTACAAGCTGTTCAGCATGAGGCTGCAAGTTTGTTGAAGGAGATAGAGTCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTTTGGGATCAAGCTCTTATGAAGAACTTCAACAAATAGAACAACAGCTAGAAAGGAGCTTATCCCATGTTAGAGCTAGAAAGGAGAAGTATTTGGAAGCTGAAAATGCAAAGTTTGGTAAAAAGTACTTAGTTCAACTCGAGCCTCAACAATCACTGATTCAACTAGTAGAGGCTTCACCTCATCCAGAAGGTAGTTCGATTTCCGACGTTGAAACGGAGTTGTTCATCGGACTGCCCAAGTCGAGATCAAAGTGA 606 44.72 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSRGKLYEFASSSMQATVGRFLRHTRETSHLERPLAPCHNLQAVQHEAASLLKEIESLEVSKRKLLGEGLGSSSYEELQQIEQQLERSLSHVRARKEKYLEAENAKFGKKYLVQLEPQQSLIQLVEASPHPEGSSISDVETELFIGLPKSRSK 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42931674 42936869 - Maker00031737 Lcy11g1921 647822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1921 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy11g1921 201 Coils Coil 89 116 - -
Lcy11g1921 201 Coils Coil 123 143 - -
Lcy11g1921 201 Pfam K-box region 89 159 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy11g1921 201 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy11g1921 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy11g1921 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy11g1921 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy11g1921 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy11g1921 201 ProSiteProfiles K-box domain profile. 89 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy11g1921 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 167 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy11g1921 201 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy11g1921 201 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy11g1921 201 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
Lcy11g1921 201 Gene3D - 14 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy11g1921 201 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1921 Lcy-Chr11:42931674 Lcy13g0612 Lcy-Chr13:8032163 2.42E-66 dispersed
Lcy11g1921 Lcy-Chr11:42931674 Lcy12g1715 Lcy-Chr12:37696684 1.72E-53 wgd
Lcy11g1921 Lcy-Chr11:42931674 Lcy6g0207 Lcy-Chr6:1858196 5.33E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19171 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1921 - - - 0.0