Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1940 ATGAGTTTTGCGGTAAGATTCGACTGTAGTGGTGGTGGTGGTTACGGCGGCGACGGTGGAGACGGTGGCGACGGCAGTCTTATGGCCTCCGGTGCTATTGCTCAACCACGCCTTGTTACTCACTCTTATTTCCACAAATCCATGTTCTCTTCCCCTAGACTCTCTCTCGCTCTCACGAATCTCGATGGGCTCGGCTCCGGCGAGATGATTCCGGCGGACGGTGGTTTTGAGGTCAATGTTCGGCGGAGGAGTAGAGAGGAAGAGCCGGCGGAGAGCAGATCCGGCAGCGACAATATGGACGGCGGCGGCGGTTGTGGCTCCGGCGACGATCTCGACGCTGCCGCTGCCGTCGGCGATAATCCTAGGAAGAAGAAACGGTACCACCGGCACACTCCTCAGCAAATCCAAGAACTCGAAGCTATGTTCAAGGAATGTCCTCATCCCGACGAGAAACAGCGATTGGAGCTCAGTAGACGGCTCTCTTTAGAAACAAAACAAGTTAAATTCTGGTTTCAAAATCGTCGAACTCAAATGAAGACTCAATTGGAACGCCACGAGAACACATTACTCCGGCAAGAGAATGACAAGCTCCGAGCAGAGAACATGGCGATTCGCGAGGCCATAAGAAACCCAATCTGCTCGACCTGCGGCGGCCCGGCCATGATCGGAGAAATCTCTCTCGAAGAGCAGCAGCTCCGAATCGAAAACGCCCGACTGAAGGAGGAACTGGAGCGGGTGTGCGCCCTGGCAGGGAAGTTCCTGGGGCGGCCGGTTCCGGTGGCATCGTCGCCGCCGTTGGAGCTGGGAGTGGGGAGCAATCTGGAGGAATTTGGAGGAGGAATGATGGAGAGATCTGTGTATCTGGAAATGGCGCTGGCGGCCATGGATGAGCTAGTGAAAATGGCGGATGGAGAGGAGGCGTTGTGGATTGGAGAGAAGCTGAATGAAGAAGAATATCTGAGAATGTTCAGTGGTGGGTGCGTCGGGATTAAGCCGAATGGATTCGTTTCTGAAGGTTCGAGAGAGAGTGGAATCGTCATCGTCAACAGTTGTGCTCTGGTTGAAACTTTAATGGACTCTAACCGGTGGGTGGAGATGTTTCCGAACTTGGTCACGACGGCCGCCACCACCGACGTCATCTCCGGCGGCATGGCAGGAACCAGAAACGGCGCTCTTCAACTGATGCATGCGGAGCTCCAAATTCTATCTCCCATGGTTCCGGTGAGGCAATTAAGCTTCCTCCGCTTCTGCAAGCAGCACGCAGAAGGCGTTTGGGCCGTCGTCGACGTCTCGATCGATGCCATTACAGAAACTTCCTCTCCGCCGTGCCGGAGACTCCCCTCCGGCTGCCTCATCCACGACATGCCCAATGGCTACTCCAAGGTCACTTGGGTTGAACATTCACAATACGATGAAAGCCATATTCATGAAATGTACCGGCCCCTCGTCGGCTCCAGTCTCGGCTTCGGCGCCCGACGGTGGATCGCCACCCTCCAACGCCAATGCGAGTGCCTCGCCATCCTCATCTCCACTCCATCAGACCATTCTGGGATTTCGGCGAGTGGGCGGCGGAGCATGGTGAAGCTAGCGCAGCGGATGACGGCGAATTTCTGCGCCGGAGTATGTGCGTCGACGGTGTACAAATGGAACAAGCTAAACACCGGCAATAATGTGGGGGAGGATGTGAGAGTGATGACGAGGAAGAGCGTCGACGATCCCGGAGAGCCGCCGGGGACGGTGCTGAGTGCAGCGACGTCGTCTCTAAATCCAAGCCAGAATAGTATGTTAATTCTGCAAGAGACTTGCACCGATCCATCGGGGTCGCTTGTGGTGTACGCGCCGGTGGACATTCCGGCGATGCAGGTGGTGATGAACGGAGGCGACTCGGCCTACGTGGCGCTGCTGCCGTCGGGGTTCGCGGTGGTGCCGGCGGGGGATGGCGGTGGCGGTGGAGGGAGTCTGTTGACGGTGGCGTTTCAGATATTGGTGAACAGTTTGCCGACGGACAAGCTGACGGTGGAGTCGGTGGAGACGGTGAATAATCTTATATCGTGTACGGTGCAAAAAATCAAAGCCGCGCTCCGGTGTCACGAGACTTCCACGTGA 2106 56.41 MSFAVRFDCSGGGGYGGDGGDGGDGSLMASGAIAQPRLVTHSYFHKSMFSSPRLSLALTNLDGLGSGEMIPADGGFEVNVRRRSREEEPAESRSGSDNMDGGGGCGSGDDLDAAAAVGDNPRKKKRYHRHTPQQIQELEAMFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMAIREAIRNPICSTCGGPAMIGEISLEEQQLRIENARLKEELERVCALAGKFLGRPVPVASSPPLELGVGSNLEEFGGGMMERSVYLEMALAAMDELVKMADGEEALWIGEKLNEEEYLRMFSGGCVGIKPNGFVSEGSRESGIVIVNSCALVETLMDSNRWVEMFPNLVTTAATTDVISGGMAGTRNGALQLMHAELQILSPMVPVRQLSFLRFCKQHAEGVWAVVDVSIDAITETSSPPCRRLPSGCLIHDMPNGYSKVTWVEHSQYDESHIHEMYRPLVGSSLGFGARRWIATLQRQCECLAILISTPSDHSGISASGRRSMVKLAQRMTANFCAGVCASTVYKWNKLNTGNNVGEDVRVMTRKSVDDPGEPPGTVLSAATSSLNPSQNSMLILQETCTDPSGSLVVYAPVDIPAMQVVMNGGDSAYVALLPSGFAVVPAGDGGGGGGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVQKIKAALRCHETST 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 43090776 43097466 + Maker00031973 Lcy11g1940 647841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1940 701 Coils Coil 175 210 - -
Lcy11g1940 701 SMART START_1 289 504 IPR002913 GO:0008289(InterPro)
Lcy11g1940 701 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677(InterPro)
Lcy11g1940 701 Pfam Homeodomain 124 179 IPR001356 GO:0003677(InterPro)
Lcy11g1940 701 SMART HOX_1 122 185 IPR001356 GO:0003677(InterPro)
Lcy11g1940 701 Coils Coil 222 249 - -
Lcy11g1940 701 MobiDBLite consensus disorder prediction 78 94 - -
Lcy11g1940 701 Pfam START domain 290 504 IPR002913 GO:0008289(InterPro)
Lcy11g1940 701 CDD START_ArGLABRA2_like 284 503 - -
Lcy11g1940 701 SUPERFAMILY Bet v1-like 282 504 - -
Lcy11g1940 701 SUPERFAMILY Homeodomain-like 109 181 IPR009057 -
Lcy11g1940 701 Gene3D - 113 197 - -
Lcy11g1940 701 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy11g1940 701 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 112 587 IPR042160 -
Lcy11g1940 701 CDD homeodomain 124 181 IPR001356 GO:0003677(InterPro)
Lcy11g1940 701 ProSiteProfiles START domain profile. 280 507 IPR002913 GO:0008289(InterPro)
Lcy11g1940 701 MobiDBLite consensus disorder prediction 71 131 - -
Lcy11g1940 701 FunFam Homeobox-leucine zipper protein HDG1 111 197 - -
Lcy11g1940 701 SUPERFAMILY Bet v1-like 548 691 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1940 Lcy-Chr11:43090776 Lcy8g1446 Lcy-Chr8:41124241 6.48E-201 dispersed
Lcy11g1940 Lcy-Chr11:43090776 Lcy13g0637 Lcy-Chr13:8674854 1.68E-302 wgd
Lcy11g1940 Lcy-Chr11:43090776 Lcy6g0182 Lcy-Chr6:1654579 6.48E-219 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19173 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1940 K09338 - mdm:103448231 856.67