Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1953 TTAGCTCTTGGTGAGATGTCACTGTTTCTGCGTCGGGACTGTGATTGCCGGAGCTTCGTTTTTCCCACAAATTTCTCTGCCGCAGTCGTCTCACCATTGTTTTCTCAGCCTTCAGCATCGTCTAGTGCTCCGTGTGAACAGTTATATGTGTTGTTGATTGATTCGTTTGAATTGAATGCACGAGTGACTGATCGGATGGGTGGAATGATGTGTTTGATTGAGTGGCAACGGTGGTTGAATGATTGGCAATCTTGTATTTGGAAGCAAAATGTGTTATGTGGTAGTGACAGAACATATTGCAAGACGTTGGACCAGTTTGGTCCCGGCAATGTGCTTAGAAATAGAATTATTGATGCCAAGTTGACTGGTGGTTCAAGAGTGTTTTATAAAGTGCCTAAGAAGAGAAACAGAATAGCAGCTTCTAGCAATTCCAATCATTTGAGTCTGGTTTGTGCTAGCAAGTTTGACGGTGCTTTGCAAATTTTGAATCACAAGAGATTCTTGAACTGCAACAATAAGATAATTGGAAGAAGGATGAGGATGGTTAATTCAGAGTGTCAAAGCAATGATTCTTTAGCATTTATTGATGGAAATGGCCGAAATGTGGAATATGTAGATACCGGTGATGAAGGATCCAGTTCCGAACCTACTGATGGTGTAGGGTCAGCTGGTTCCAAAGAAGCTGGTGGAGAAGCAGAAGCGGTAGAAACGGATGCACCGACTGTGGATGAGCTTAGAGAATTGCTGCAAAAGGCCATGACAGAATTGGAAGTTGCGAGACTTAATAGTACCATGTTCGAGGAGAAGGCCCAAAAAATATCAGAGACAGCAATAGCTTTGCAAGATGAAGCAGCCCATGCTTGGAATGATGTGAACTCTACTCTCGATTCTGTACAACAGATAGTGAATGAAGAATATGTTGCCAAAGAAGCTGTTCAAAAAGCAACCATGGCTCTTTCATTAGCAGAAGCAAGGCTTCAGGTGGCAATAGAGTCATTGGATCTGGCAAAAGGAGGAAATGATTCTCCAGAAACATCAATAGATAGTGAGGGGGAGATTGATGGCAAGGAAGAGCAAGAAGTGTTGTTACTTGCTCAGGAGGACATCAAAGAATGCCGGGCAAATTTGGAAAATTGTGATGTGGAATTGAAGCGTGTGCAGAGTAAAAAGGAAGAGTTACAGAAGGAAGTGGACAGGTTGAATGAGTTAGCTGAAAAGGCACAATTGAATGCGTTGAAAGCTGAAGAAGATGTGGCAAATATAATGCTTTTGGCTGAGCAAGCTGTTGCTTTTGAACTTGAGGCTGCCCAAAGGGTCAGTGATGCTGAAATAGCTTTACAGAAAGTGGAGAAATCTTTATCAAATTCTTTTGTTGACACTTCGGAAACCACCCAGGGGTCAAATGTTATTGAAGTTGTTAATGAGGATAATAAGGCAGTTCTAGAAATTTCAGGTGATATTGCTGTTGAAATGGATAGAGATTTGCCACTTAGTGGCGATTCCTTAGCTGTCAAATCTCTACCAGGTAGCTTTTCAGATTCTGAAGACTCTGATCAAGCATATGACTTAAGTGATAGCGAGAATGGAAAATTGAGTTCAGACTCCTTTAAGGAGGTAGAAACTGGAGCAGAGAAGGCTGTTTTGAGTCAAGCAAAAAAGCAGGAAACACAGAAGGATTTGACCAGAGAAGGCTCGCCTTTAAATTCCCCCAAGGCTCTATTGAAAAAATCTTCTCGTTTTTTTTCAGCATCATTCTTTTCCTTTACAGTTGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTCTTCTGGATTTCACGAGAAAGCAATTGCCAAAGCTAGTTGTTGGAGTAGTACTGTTAGGAGCAGGGATCACTATCTTTTCAAATCGAGCAGAAAGGAGTTCTCAGATGTTTCAGCAGCCTGATGCTGTCTCCATTAGCACTGATGAAGTGAATGAAGAGGAGGCTTCACTGTTAGACATGTTATGGCTGTTGCTTGCTAGTGTTATATTTGTGCCAACATTTCAGAAACTTCCTGGAGGAAGTCCTGTCCTTGGGTACTTGGCTGCTGGCATTTTAATTGGGCCATATGGTCTCTCCATAATCCGTCACGTGCATGGAACTAAAGCAATTGCTGAATTTGGAGTTGTTTTTCTCCTGTTCAACATTGGCCTGGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTCCTGGTTACAGCTGTGGTGGTCGGCTTGGTTGCTCATATTGTCTGTGGGCAGCCTGGCCCAGCTGCAATTGTCATTGGAAATGGTTTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGCACTTCACGTCATGGGCGTGCCACGTTTTCTGTCTTACTATTCCAGGATTTGGCTGTTGTGGTTTTGCTGATTCTCATACCTCTAATTTCACCCAACTCATCCAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTTGGCGTAGCTGCTGTTAAGGCAATAGTTGCCATTTCTGCCATAATAGCTGGTGGGCGCCTGCTACTACGACCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTACTTGTCATTCTGGGAACAAGTCTACTTACTGCCAGGGCTGGACTATCAATGGCGCTGGGTGCATTTCTAGCAGGTTTACTACTAGCAGAAACAGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTAGGTCTCTTCTTCATGACGGTCGGGATGTCCATCGATCCAAAACTTCTTCTTTCTAACTTTCCAGTTATCACGGGGTCTTTGGGACTTCTTATTGGTGGCAAGACTATATTAGTTGCCTTGGTTGGTAGACTTTTTGGCATCTCAATTATATCTGCGTTGAGAGTTGGGTTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCGTTTGGTGAAGCTGTCAATCAGGGTATAATGTCTTCGCAACTATCCTCTTTATTGTTTCTTGTTGTGGGAATTTCAATGGCGCTTACACCGTGGCTAGCTGCTGGTGGTCAGTTAATTGCTTCTCGTTTTGAGCAGCATGATGTTCGGAGTTTATTACCTGTTGAAAGTGAGACTGACGATTTACAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGTCAGATAATAGCCCAGCTTCTGTCAGAGCGACTGATTCCTTTTGTTGCCCTTGATGTGAGAAGTGATAGAGTGGCTGTTGGACGTGCCCTAGACCTTCCTGTGTATTTTGGAGATGCAGGAAGTCGAGAGGTTCTTCATAAAGTTGGTGCTGAAAGGGCATGTGCCGCTGCAATAACATTGGATACACCGGGTGCAAATTACAGAACTGTTTGGGCTCTGAGCAAGTATTTCCCTAATGTTAAGACTTTTGTTCGAGCTCATGATGTTGATCACGGCCTTAATTTGGAGAAAGCTGGGGCTACTGCGGTGGTTCCCGAGACGTTGGAACCAAGCTTACAGTTAGCTGCCGCCGTTCTTGCTCAGGCTAAACTGCCCATGTCAGAGATTGCTGCAACAATCAACGAGTTTAGGTCCCGACATTTATCCGAGCTTACCGAGCTATGTGAAGCTAGCGGAAGCTCACTCGGATACGGGTTTTCTCGGATCATGAGCAAACCGAAAATTCAAACCTCTGATTCTTCAGATGAGAACCAAATCACAGAAGGAACTCTAGCTATATGA 3795 43.56 LALGEMSLFLRRDCDCRSFVFPTNFSAAVVSPLFSQPSASSSAPCEQLYVLLIDSFELNARVTDRMGGMMCLIEWQRWLNDWQSCIWKQNVLCGSDRTYCKTLDQFGPGNVLRNRIIDAKLTGGSRVFYKVPKKRNRIAASSNSNHLSLVCASKFDGALQILNHKRFLNCNNKIIGRRMRMVNSECQSNDSLAFIDGNGRNVEYVDTGDEGSSSEPTDGVGSAGSKEAGGEAEAVETDAPTVDELRELLQKAMTELEVARLNSTMFEEKAQKISETAIALQDEAAHAWNDVNSTLDSVQQIVNEEYVAKEAVQKATMALSLAEARLQVAIESLDLAKGGNDSPETSIDSEGEIDGKEEQEVLLLAQEDIKECRANLENCDVELKRVQSKKEELQKEVDRLNELAEKAQLNALKAEEDVANIMLLAEQAVAFELEAAQRVSDAEIALQKVEKSLSNSFVDTSETTQGSNVIEVVNEDNKAVLEISGDIAVEMDRDLPLSGDSLAVKSLPGSFSDSEDSDQAYDLSDSENGKLSSDSFKEVETGAEKAVLSQAKKQETQKDLTREGSPLNSPKALLKKSSRFFSASFFSFTVDGTEFTPALVFQGLLDFTRKQLPKLVVGVVLLGAGITIFSNRAERSSQMFQQPDAVSISTDEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHIVCGQPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGVAAVKAIVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGSLGLLIGGKTILVALVGRLFGISIISALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTELCEASGSSLGYGFSRIMSKPKIQTSDSSDENQITEGTLAI 1264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 43173678 43187807 - Maker00031770 Lcy11g1953 647854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1953 1264 MobiDBLite consensus disorder prediction 508 570 - -
Lcy11g1953 1264 Coils Coil 369 417 - -
Lcy11g1953 1264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1065 1207 IPR036291 -
Lcy11g1953 1264 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 406 1262 - GO:0009507(PANTHER)|GO:0015386(PANTHER)|GO:0016020(PANTHER)
Lcy11g1953 1264 FunFam K(+) efflux antiporter 2 chloroplastic 656 1042 - -
Lcy11g1953 1264 Pfam Sodium/hydrogen exchanger family 670 1037 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lcy11g1953 1264 Coils Coil 242 262 - -
Lcy11g1953 1264 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 667 947 IPR004771 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)
Lcy11g1953 1264 Pfam TrkA-N domain 1069 1182 IPR003148 GO:0006813(InterPro)
Lcy11g1953 1264 Gene3D - 656 1044 IPR038770 -
Lcy11g1953 1264 MobiDBLite consensus disorder prediction 204 239 - -
Lcy11g1953 1264 FunFam K(+) efflux antiporter 2 chloroplastic 1064 1228 - -
Lcy11g1953 1264 Gene3D - 1064 1228 - -
Lcy11g1953 1264 ProSiteProfiles RCK N-terminal domain profile. 1068 1190 IPR003148 GO:0006813(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1953 Lcy-Chr11:43173678 Lcy6g0227 Lcy-Chr6:2049188 2.28E-36 dispersed
Lcy11g1953 Lcy-Chr11:43173678 Lcy4g0123 Lcy-Chr4:1627379 3.54E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1953 K03455 - csv:101213081 1904.41