Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1953 | TTAGCTCTTGGTGAGATGTCACTGTTTCTGCGTCGGGACTGTGATTGCCGGAGCTTCGTTTTTCCCACAAATTTCTCTGCCGCAGTCGTCTCACCATTGTTTTCTCAGCCTTCAGCATCGTCTAGTGCTCCGTGTGAACAGTTATATGTGTTGTTGATTGATTCGTTTGAATTGAATGCACGAGTGACTGATCGGATGGGTGGAATGATGTGTTTGATTGAGTGGCAACGGTGGTTGAATGATTGGCAATCTTGTATTTGGAAGCAAAATGTGTTATGTGGTAGTGACAGAACATATTGCAAGACGTTGGACCAGTTTGGTCCCGGCAATGTGCTTAGAAATAGAATTATTGATGCCAAGTTGACTGGTGGTTCAAGAGTGTTTTATAAAGTGCCTAAGAAGAGAAACAGAATAGCAGCTTCTAGCAATTCCAATCATTTGAGTCTGGTTTGTGCTAGCAAGTTTGACGGTGCTTTGCAAATTTTGAATCACAAGAGATTCTTGAACTGCAACAATAAGATAATTGGAAGAAGGATGAGGATGGTTAATTCAGAGTGTCAAAGCAATGATTCTTTAGCATTTATTGATGGAAATGGCCGAAATGTGGAATATGTAGATACCGGTGATGAAGGATCCAGTTCCGAACCTACTGATGGTGTAGGGTCAGCTGGTTCCAAAGAAGCTGGTGGAGAAGCAGAAGCGGTAGAAACGGATGCACCGACTGTGGATGAGCTTAGAGAATTGCTGCAAAAGGCCATGACAGAATTGGAAGTTGCGAGACTTAATAGTACCATGTTCGAGGAGAAGGCCCAAAAAATATCAGAGACAGCAATAGCTTTGCAAGATGAAGCAGCCCATGCTTGGAATGATGTGAACTCTACTCTCGATTCTGTACAACAGATAGTGAATGAAGAATATGTTGCCAAAGAAGCTGTTCAAAAAGCAACCATGGCTCTTTCATTAGCAGAAGCAAGGCTTCAGGTGGCAATAGAGTCATTGGATCTGGCAAAAGGAGGAAATGATTCTCCAGAAACATCAATAGATAGTGAGGGGGAGATTGATGGCAAGGAAGAGCAAGAAGTGTTGTTACTTGCTCAGGAGGACATCAAAGAATGCCGGGCAAATTTGGAAAATTGTGATGTGGAATTGAAGCGTGTGCAGAGTAAAAAGGAAGAGTTACAGAAGGAAGTGGACAGGTTGAATGAGTTAGCTGAAAAGGCACAATTGAATGCGTTGAAAGCTGAAGAAGATGTGGCAAATATAATGCTTTTGGCTGAGCAAGCTGTTGCTTTTGAACTTGAGGCTGCCCAAAGGGTCAGTGATGCTGAAATAGCTTTACAGAAAGTGGAGAAATCTTTATCAAATTCTTTTGTTGACACTTCGGAAACCACCCAGGGGTCAAATGTTATTGAAGTTGTTAATGAGGATAATAAGGCAGTTCTAGAAATTTCAGGTGATATTGCTGTTGAAATGGATAGAGATTTGCCACTTAGTGGCGATTCCTTAGCTGTCAAATCTCTACCAGGTAGCTTTTCAGATTCTGAAGACTCTGATCAAGCATATGACTTAAGTGATAGCGAGAATGGAAAATTGAGTTCAGACTCCTTTAAGGAGGTAGAAACTGGAGCAGAGAAGGCTGTTTTGAGTCAAGCAAAAAAGCAGGAAACACAGAAGGATTTGACCAGAGAAGGCTCGCCTTTAAATTCCCCCAAGGCTCTATTGAAAAAATCTTCTCGTTTTTTTTCAGCATCATTCTTTTCCTTTACAGTTGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTCTTCTGGATTTCACGAGAAAGCAATTGCCAAAGCTAGTTGTTGGAGTAGTACTGTTAGGAGCAGGGATCACTATCTTTTCAAATCGAGCAGAAAGGAGTTCTCAGATGTTTCAGCAGCCTGATGCTGTCTCCATTAGCACTGATGAAGTGAATGAAGAGGAGGCTTCACTGTTAGACATGTTATGGCTGTTGCTTGCTAGTGTTATATTTGTGCCAACATTTCAGAAACTTCCTGGAGGAAGTCCTGTCCTTGGGTACTTGGCTGCTGGCATTTTAATTGGGCCATATGGTCTCTCCATAATCCGTCACGTGCATGGAACTAAAGCAATTGCTGAATTTGGAGTTGTTTTTCTCCTGTTCAACATTGGCCTGGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTCCTGGTTACAGCTGTGGTGGTCGGCTTGGTTGCTCATATTGTCTGTGGGCAGCCTGGCCCAGCTGCAATTGTCATTGGAAATGGTTTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGCACTTCACGTCATGGGCGTGCCACGTTTTCTGTCTTACTATTCCAGGATTTGGCTGTTGTGGTTTTGCTGATTCTCATACCTCTAATTTCACCCAACTCATCCAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTTGGCGTAGCTGCTGTTAAGGCAATAGTTGCCATTTCTGCCATAATAGCTGGTGGGCGCCTGCTACTACGACCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTACTTGTCATTCTGGGAACAAGTCTACTTACTGCCAGGGCTGGACTATCAATGGCGCTGGGTGCATTTCTAGCAGGTTTACTACTAGCAGAAACAGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTAGGTCTCTTCTTCATGACGGTCGGGATGTCCATCGATCCAAAACTTCTTCTTTCTAACTTTCCAGTTATCACGGGGTCTTTGGGACTTCTTATTGGTGGCAAGACTATATTAGTTGCCTTGGTTGGTAGACTTTTTGGCATCTCAATTATATCTGCGTTGAGAGTTGGGTTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCGTTTGGTGAAGCTGTCAATCAGGGTATAATGTCTTCGCAACTATCCTCTTTATTGTTTCTTGTTGTGGGAATTTCAATGGCGCTTACACCGTGGCTAGCTGCTGGTGGTCAGTTAATTGCTTCTCGTTTTGAGCAGCATGATGTTCGGAGTTTATTACCTGTTGAAAGTGAGACTGACGATTTACAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGTCAGATAATAGCCCAGCTTCTGTCAGAGCGACTGATTCCTTTTGTTGCCCTTGATGTGAGAAGTGATAGAGTGGCTGTTGGACGTGCCCTAGACCTTCCTGTGTATTTTGGAGATGCAGGAAGTCGAGAGGTTCTTCATAAAGTTGGTGCTGAAAGGGCATGTGCCGCTGCAATAACATTGGATACACCGGGTGCAAATTACAGAACTGTTTGGGCTCTGAGCAAGTATTTCCCTAATGTTAAGACTTTTGTTCGAGCTCATGATGTTGATCACGGCCTTAATTTGGAGAAAGCTGGGGCTACTGCGGTGGTTCCCGAGACGTTGGAACCAAGCTTACAGTTAGCTGCCGCCGTTCTTGCTCAGGCTAAACTGCCCATGTCAGAGATTGCTGCAACAATCAACGAGTTTAGGTCCCGACATTTATCCGAGCTTACCGAGCTATGTGAAGCTAGCGGAAGCTCACTCGGATACGGGTTTTCTCGGATCATGAGCAAACCGAAAATTCAAACCTCTGATTCTTCAGATGAGAACCAAATCACAGAAGGAACTCTAGCTATATGA | 3795 | 43.56 | LALGEMSLFLRRDCDCRSFVFPTNFSAAVVSPLFSQPSASSSAPCEQLYVLLIDSFELNARVTDRMGGMMCLIEWQRWLNDWQSCIWKQNVLCGSDRTYCKTLDQFGPGNVLRNRIIDAKLTGGSRVFYKVPKKRNRIAASSNSNHLSLVCASKFDGALQILNHKRFLNCNNKIIGRRMRMVNSECQSNDSLAFIDGNGRNVEYVDTGDEGSSSEPTDGVGSAGSKEAGGEAEAVETDAPTVDELRELLQKAMTELEVARLNSTMFEEKAQKISETAIALQDEAAHAWNDVNSTLDSVQQIVNEEYVAKEAVQKATMALSLAEARLQVAIESLDLAKGGNDSPETSIDSEGEIDGKEEQEVLLLAQEDIKECRANLENCDVELKRVQSKKEELQKEVDRLNELAEKAQLNALKAEEDVANIMLLAEQAVAFELEAAQRVSDAEIALQKVEKSLSNSFVDTSETTQGSNVIEVVNEDNKAVLEISGDIAVEMDRDLPLSGDSLAVKSLPGSFSDSEDSDQAYDLSDSENGKLSSDSFKEVETGAEKAVLSQAKKQETQKDLTREGSPLNSPKALLKKSSRFFSASFFSFTVDGTEFTPALVFQGLLDFTRKQLPKLVVGVVLLGAGITIFSNRAERSSQMFQQPDAVSISTDEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHIVCGQPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGVAAVKAIVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGSLGLLIGGKTILVALVGRLFGISIISALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTELCEASGSSLGYGFSRIMSKPKIQTSDSSDENQITEGTLAI | 1264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 43173678 | 43187807 | - | Maker00031770 | Lcy11g1953 | 647854 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1953 | 1264 | MobiDBLite | consensus disorder prediction | 508 | 570 | - | - | |
Lcy11g1953 | 1264 | Coils | Coil | 369 | 417 | - | - | |
Lcy11g1953 | 1264 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 1065 | 1207 | IPR036291 | - | |
Lcy11g1953 | 1264 | PANTHER | K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC | 406 | 1262 | - | GO:0009507(PANTHER)|GO:0015386(PANTHER)|GO:0016020(PANTHER) | |
Lcy11g1953 | 1264 | FunFam | K(+) efflux antiporter 2 chloroplastic | 656 | 1042 | - | - | |
Lcy11g1953 | 1264 | Pfam | Sodium/hydrogen exchanger family | 670 | 1037 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
Lcy11g1953 | 1264 | Coils | Coil | 242 | 262 | - | - | |
Lcy11g1953 | 1264 | NCBIfam | monovalent cation:proton antiporter-2 (CPA2) family protein | 667 | 947 | IPR004771 | GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro) | |
Lcy11g1953 | 1264 | Pfam | TrkA-N domain | 1069 | 1182 | IPR003148 | GO:0006813(InterPro) | |
Lcy11g1953 | 1264 | Gene3D | - | 656 | 1044 | IPR038770 | - | |
Lcy11g1953 | 1264 | MobiDBLite | consensus disorder prediction | 204 | 239 | - | - | |
Lcy11g1953 | 1264 | FunFam | K(+) efflux antiporter 2 chloroplastic | 1064 | 1228 | - | - | |
Lcy11g1953 | 1264 | Gene3D | - | 1064 | 1228 | - | - | |
Lcy11g1953 | 1264 | ProSiteProfiles | RCK N-terminal domain profile. | 1068 | 1190 | IPR003148 | GO:0006813(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1953 | Lcy-Chr11:43173678 | Lcy6g0227 | Lcy-Chr6:2049188 | 2.28E-36 | dispersed | |
Lcy11g1953 | Lcy-Chr11:43173678 | Lcy4g0123 | Lcy-Chr4:1627379 | 3.54E-76 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1953 | K03455 | - | csv:101213081 | 1904.41 |