Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1973 | ATGGCGGTTGTGAGTCCTATACAAGCAACTACACCTCGAGCTGGTCCGACTAATTATGCTGAAGCTTCACCGATTATGATAAGCTCAAGCAGAGAGATTGTAGAAGAGCCAGTGGGAGTTATCAATGAAGATACAATTTGGGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTCTGAGGTATGCACTAAAATCCTCTCGTGGGAAGAAGATTTGCCTCCTCCATGTTCATATCCCCGCACAGATGATTCCATTAATGGGTACCAGATTTCCAGCGAACTCATTGGAGAAAGAGGAAGTAAGAGCATATCATGAGTTTGAGAAGCAAAATTTGCCGAGGGTCATGAATGAGTATATTCTGTACTGTCTTCAAGAAGGGGTTCATGCTGAGAGATTATGTGCTGAAGCTGAGAGTATCGAGAAGGGAATAGTTGATATGATTTCCCAACACGGGATTAAAAAGCTTGTTATGGGAGCAGCTGTAGACAAGTGCTATTCAAGGAAAATGGTAGATCTGAAGTCTAAGAAAGCCATTTATGTGCGTTCACAGGCACCGGCTTTCTGTCACATTGATTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCGGATGGAGCTCAAGTAGAAGCCGCCATCTCATCACCACAAACAAGTCCAAATGCTGAAGCCTCAGAGATTGCCCACCGGCGATCTCAGTCACTGCCACTGGGGCAGGTTAACAGTAGGGAAGTTGGAAGTCCATCTTCAGATTTACGCCCTAGAGGGAGATCATTGCTTCTTGACCATTTTAGAGGAAGCACGCTAGACCCTTCTTCTTCTCCATATATTATGAATGGGGTTCGCACTCCAAGAAACTTGGATGTTAATGAGGCTTTTGATGAATGGGGTTTATTGGCAAGGAGAAGTCCTTCTGAAAGGTCAGACAATTCCTTACGCTCTCCTCGTGGTGTGATTGACATGGCTCCTTCTCCACTTTCCAGGGTTGAGTTATGTGAAAATGGGCTGGAGGATGGGAAAACCAGTGATTGCCTTTACAATCAATGTGAACGGGTGATGATGGAGGCTGCAAATGCAAGGCGTGATGCATTTTTAGAGGCAATTGCGCGTAGAAAATCTGAGAAAGAGACCATTAATGCTCTACGCAGGGTTAAAGCTGCAGAAGAGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAACTAGCAAGGGAAAGGGCAAAACTTGAAAGCATAAAGAAGCAACTAAATGAGGAGACGGAAGAGCTCCGGATAGCCCAAGATCAGAAGGCAAGCCTTGAGCGAGAACTTTTAGAATCTGATCTAACAGCTAAGGAGTTGGAGCAGAAGATCCTTTCTGCTGTTGAATTGTTACAGAATTACAAAAGAGAGCGAGAGGATTTGCAGATTCAACGGGACAATGCACTTATAGAAGCAGAGGAGCTTAGAAGAAATCAATCTGCTGGCGGATACCTTCCGCAGTTCTATACCGAGTTCCCATTTCGGGAGATTGAGGAAGCAACTAGAAACTTCGATCCCTCCCTGAAGATTGGAGAAGGGGGATATGGAAGTATATATAAAGGTTTCTTGCGTCATACTATGGTGGCTATAAAAATCCTACATTCCGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTTTTGAGTAAGACGAGACATCCCAATCTTGTCACGCTCATTGGAGCCTGTCCAGAAGCTTGGGTTCTCATCTACGAATACCTCTGTAATGGTAGCCTGGAAGATAGGCTCAACTGCAAGGATAATACTCCGCCTTTATCTTGGCAAACACGAATACGCATTGCCACCGAGTTATGCTCGGCCCTTATGTTTCTTCACTCCAGTAAGCCCCACAGCATCATTCATGGAGACTTGAAACCTGCAAATATACTACTTGATACGAACTTTGTATGCAAGCTTGGTGACTTTGGAATTTGTCGCTTATTGTCTCGGGATGAAATACTAAACAACAATGAAACACTTGTTTGGAGAACTGACAACCCCAAGGGAACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTCTATTCATTTGGGATAATACTGTTGCGGTTATTGACCGGTAGATCTGCAATTGGGATAACAAAGGAAGTGCAATATGCAATGGGAAATGGAAAGTTAAAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTCGTGCAGGCTGAACAGCTCGCTCGATTGGCATTGAGGTGTTGCGATATGAATCGAAAGAGCCGCCCCGATCTCATTACTGATGTCTGGAGAGTGCTTGGACCAATGAGGGCTTCTTGTGGGGGCTTGTTGTCCGTCCAGCTGGGTTCTGCAGAACACTTGCAACCTCCCCCTTATTTTATCTGTCCCATCTTTCAGTCTCTAATCTCAAGGCTTGGTCTGTTTCTCCCACATTCAAATCCACAGGAAGTCATGCAGGATCCACATGTGGCTGCTGATGGTTTTACATATGAAGCAGAGGCCGTGAGAGGATGGCTAGACAGTGGACATGATACTTCGCCAATGACGAATCTTAGGCTCGAGCACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAGGAGTGGCTCCAACGGAACTGA | 2682 | 45.04 | MAVVSPIQATTPRAGPTNYAEASPIMISSSREIVEEPVGVINEDTIWVAVGKDVKECLSVLRYALKSSRGKKICLLHVHIPAQMIPLMGTRFPANSLEKEEVRAYHEFEKQNLPRVMNEYILYCLQEGVHAERLCAEAESIEKGIVDMISQHGIKKLVMGAAVDKCYSRKMVDLKSKKAIYVRSQAPAFCHIDFICKGNLICTREGRSDGAQVEAAISSPQTSPNAEASEIAHRRSQSLPLGQVNSREVGSPSSDLRPRGRSLLLDHFRGSTLDPSSSPYIMNGVRTPRNLDVNEAFDEWGLLARRSPSERSDNSLRSPRGVIDMAPSPLSRVELCENGLEDGKTSDCLYNQCERVMMEAANARRDAFLEAIARRKSEKETINALRRVKAAEELYAEELKQRKEVEQELARERAKLESIKKQLNEETEELRIAQDQKASLERELLESDLTAKELEQKILSAVELLQNYKREREDLQIQRDNALIEAEELRRNQSAGGYLPQFYTEFPFREIEEATRNFDPSLKIGEGGYGSIYKGFLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKTRHPNLVTLIGACPEAWVLIYEYLCNGSLEDRLNCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANILLDTNFVCKLGDFGICRLLSRDEILNNNETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAIGITKEVQYAMGNGKLKSILDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLITDVWRVLGPMRASCGGLLSVQLGSAEHLQPPPYFICPIFQSLISRLGLFLPHSNPQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN | 893 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 43345551 | 43351463 | + | Maker00031421 | Lcy11g1973 | 647874 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1973 | 893 | Pfam | Protein kinase domain | 523 | 775 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1973 | 893 | CDD | RING-Ubox_WDSUB1-like | 808 | 879 | - | - | |
Lcy11g1973 | 893 | PANTHER | OS02G0152300 PROTEIN | 47 | 887 | IPR051348 | - | |
Lcy11g1973 | 893 | ProSiteProfiles | U-box domain profile. | 833 | 893 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy11g1973 | 893 | SUPERFAMILY | RING/U-box | 802 | 893 | - | - | |
Lcy11g1973 | 893 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 636 | 648 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy11g1973 | 893 | FunFam | receptor-like protein kinase FERONIA | 483 | 590 | - | - | |
Lcy11g1973 | 893 | Pfam | U-box domain | 834 | 893 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy11g1973 | 893 | MobiDBLite | consensus disorder prediction | 214 | 252 | - | - | |
Lcy11g1973 | 893 | Coils | Coil | 382 | 492 | - | - | |
Lcy11g1973 | 893 | SMART | serkin_6 | 518 | 784 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1973 | 893 | ProSiteProfiles | Protein kinase domain profile. | 518 | 811 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1973 | 893 | CDD | STK_N | 45 | 198 | - | - | |
Lcy11g1973 | 893 | SUPERFAMILY | Protein kinase-like (PK-like) | 496 | 776 | IPR011009 | - | |
Lcy11g1973 | 893 | MobiDBLite | consensus disorder prediction | 213 | 260 | - | - | |
Lcy11g1973 | 893 | ProSitePatterns | Protein kinases ATP-binding region signature. | 524 | 545 | IPR017441 | GO:0005524(InterPro) | |
Lcy11g1973 | 893 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 806 | 893 | IPR013083 | - | |
Lcy11g1973 | 893 | SMART | Ubox_2 | 810 | 889 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy11g1973 | 893 | Gene3D | Transferase(Phosphotransferase) domain 1 | 591 | 790 | - | - | |
Lcy11g1973 | 893 | Gene3D | Phosphorylase Kinase; domain 1 | 499 | 590 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0193 | Lcy-Chr11:2190263 | Lcy11g1973 | Lcy-Chr11:43345551 | 1.93E-137 | dispersed | |
Lcy11g1973 | Lcy-Chr11:43345551 | Lcy8g1810 | Lcy-Chr8:44496558 | 4.21E-148 | dispersed | |
Lcy13g0694 | Lcy-Chr13:10030075 | Lcy11g1973 | Lcy-Chr11:43345551 | 2.63E-95 | transposed | |
Lcy1g0837 | Lcy-Chr1:7153232 | Lcy11g1973 | Lcy-Chr11:43345551 | 1.41E-68 | transposed | |
Lcy11g1973 | Lcy-Chr11:43345551 | Lcy6g0154 | Lcy-Chr6:1441984 | 1.86E-180 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65477 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1973 | - | - | - | 0.0 |