Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1973 ATGGCGGTTGTGAGTCCTATACAAGCAACTACACCTCGAGCTGGTCCGACTAATTATGCTGAAGCTTCACCGATTATGATAAGCTCAAGCAGAGAGATTGTAGAAGAGCCAGTGGGAGTTATCAATGAAGATACAATTTGGGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTCTGAGGTATGCACTAAAATCCTCTCGTGGGAAGAAGATTTGCCTCCTCCATGTTCATATCCCCGCACAGATGATTCCATTAATGGGTACCAGATTTCCAGCGAACTCATTGGAGAAAGAGGAAGTAAGAGCATATCATGAGTTTGAGAAGCAAAATTTGCCGAGGGTCATGAATGAGTATATTCTGTACTGTCTTCAAGAAGGGGTTCATGCTGAGAGATTATGTGCTGAAGCTGAGAGTATCGAGAAGGGAATAGTTGATATGATTTCCCAACACGGGATTAAAAAGCTTGTTATGGGAGCAGCTGTAGACAAGTGCTATTCAAGGAAAATGGTAGATCTGAAGTCTAAGAAAGCCATTTATGTGCGTTCACAGGCACCGGCTTTCTGTCACATTGATTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCGGATGGAGCTCAAGTAGAAGCCGCCATCTCATCACCACAAACAAGTCCAAATGCTGAAGCCTCAGAGATTGCCCACCGGCGATCTCAGTCACTGCCACTGGGGCAGGTTAACAGTAGGGAAGTTGGAAGTCCATCTTCAGATTTACGCCCTAGAGGGAGATCATTGCTTCTTGACCATTTTAGAGGAAGCACGCTAGACCCTTCTTCTTCTCCATATATTATGAATGGGGTTCGCACTCCAAGAAACTTGGATGTTAATGAGGCTTTTGATGAATGGGGTTTATTGGCAAGGAGAAGTCCTTCTGAAAGGTCAGACAATTCCTTACGCTCTCCTCGTGGTGTGATTGACATGGCTCCTTCTCCACTTTCCAGGGTTGAGTTATGTGAAAATGGGCTGGAGGATGGGAAAACCAGTGATTGCCTTTACAATCAATGTGAACGGGTGATGATGGAGGCTGCAAATGCAAGGCGTGATGCATTTTTAGAGGCAATTGCGCGTAGAAAATCTGAGAAAGAGACCATTAATGCTCTACGCAGGGTTAAAGCTGCAGAAGAGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAACTAGCAAGGGAAAGGGCAAAACTTGAAAGCATAAAGAAGCAACTAAATGAGGAGACGGAAGAGCTCCGGATAGCCCAAGATCAGAAGGCAAGCCTTGAGCGAGAACTTTTAGAATCTGATCTAACAGCTAAGGAGTTGGAGCAGAAGATCCTTTCTGCTGTTGAATTGTTACAGAATTACAAAAGAGAGCGAGAGGATTTGCAGATTCAACGGGACAATGCACTTATAGAAGCAGAGGAGCTTAGAAGAAATCAATCTGCTGGCGGATACCTTCCGCAGTTCTATACCGAGTTCCCATTTCGGGAGATTGAGGAAGCAACTAGAAACTTCGATCCCTCCCTGAAGATTGGAGAAGGGGGATATGGAAGTATATATAAAGGTTTCTTGCGTCATACTATGGTGGCTATAAAAATCCTACATTCCGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTTTTGAGTAAGACGAGACATCCCAATCTTGTCACGCTCATTGGAGCCTGTCCAGAAGCTTGGGTTCTCATCTACGAATACCTCTGTAATGGTAGCCTGGAAGATAGGCTCAACTGCAAGGATAATACTCCGCCTTTATCTTGGCAAACACGAATACGCATTGCCACCGAGTTATGCTCGGCCCTTATGTTTCTTCACTCCAGTAAGCCCCACAGCATCATTCATGGAGACTTGAAACCTGCAAATATACTACTTGATACGAACTTTGTATGCAAGCTTGGTGACTTTGGAATTTGTCGCTTATTGTCTCGGGATGAAATACTAAACAACAATGAAACACTTGTTTGGAGAACTGACAACCCCAAGGGAACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTCTATTCATTTGGGATAATACTGTTGCGGTTATTGACCGGTAGATCTGCAATTGGGATAACAAAGGAAGTGCAATATGCAATGGGAAATGGAAAGTTAAAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTCGTGCAGGCTGAACAGCTCGCTCGATTGGCATTGAGGTGTTGCGATATGAATCGAAAGAGCCGCCCCGATCTCATTACTGATGTCTGGAGAGTGCTTGGACCAATGAGGGCTTCTTGTGGGGGCTTGTTGTCCGTCCAGCTGGGTTCTGCAGAACACTTGCAACCTCCCCCTTATTTTATCTGTCCCATCTTTCAGTCTCTAATCTCAAGGCTTGGTCTGTTTCTCCCACATTCAAATCCACAGGAAGTCATGCAGGATCCACATGTGGCTGCTGATGGTTTTACATATGAAGCAGAGGCCGTGAGAGGATGGCTAGACAGTGGACATGATACTTCGCCAATGACGAATCTTAGGCTCGAGCACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAGGAGTGGCTCCAACGGAACTGA 2682 45.04 MAVVSPIQATTPRAGPTNYAEASPIMISSSREIVEEPVGVINEDTIWVAVGKDVKECLSVLRYALKSSRGKKICLLHVHIPAQMIPLMGTRFPANSLEKEEVRAYHEFEKQNLPRVMNEYILYCLQEGVHAERLCAEAESIEKGIVDMISQHGIKKLVMGAAVDKCYSRKMVDLKSKKAIYVRSQAPAFCHIDFICKGNLICTREGRSDGAQVEAAISSPQTSPNAEASEIAHRRSQSLPLGQVNSREVGSPSSDLRPRGRSLLLDHFRGSTLDPSSSPYIMNGVRTPRNLDVNEAFDEWGLLARRSPSERSDNSLRSPRGVIDMAPSPLSRVELCENGLEDGKTSDCLYNQCERVMMEAANARRDAFLEAIARRKSEKETINALRRVKAAEELYAEELKQRKEVEQELARERAKLESIKKQLNEETEELRIAQDQKASLERELLESDLTAKELEQKILSAVELLQNYKREREDLQIQRDNALIEAEELRRNQSAGGYLPQFYTEFPFREIEEATRNFDPSLKIGEGGYGSIYKGFLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKTRHPNLVTLIGACPEAWVLIYEYLCNGSLEDRLNCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANILLDTNFVCKLGDFGICRLLSRDEILNNNETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAIGITKEVQYAMGNGKLKSILDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLITDVWRVLGPMRASCGGLLSVQLGSAEHLQPPPYFICPIFQSLISRLGLFLPHSNPQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 43345551 43351463 + Maker00031421 Lcy11g1973 647874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1973 893 Pfam Protein kinase domain 523 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1973 893 CDD RING-Ubox_WDSUB1-like 808 879 - -
Lcy11g1973 893 PANTHER OS02G0152300 PROTEIN 47 887 IPR051348 -
Lcy11g1973 893 ProSiteProfiles U-box domain profile. 833 893 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy11g1973 893 SUPERFAMILY RING/U-box 802 893 - -
Lcy11g1973 893 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1973 893 FunFam receptor-like protein kinase FERONIA 483 590 - -
Lcy11g1973 893 Pfam U-box domain 834 893 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy11g1973 893 MobiDBLite consensus disorder prediction 214 252 - -
Lcy11g1973 893 Coils Coil 382 492 - -
Lcy11g1973 893 SMART serkin_6 518 784 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1973 893 ProSiteProfiles Protein kinase domain profile. 518 811 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1973 893 CDD STK_N 45 198 - -
Lcy11g1973 893 SUPERFAMILY Protein kinase-like (PK-like) 496 776 IPR011009 -
Lcy11g1973 893 MobiDBLite consensus disorder prediction 213 260 - -
Lcy11g1973 893 ProSitePatterns Protein kinases ATP-binding region signature. 524 545 IPR017441 GO:0005524(InterPro)
Lcy11g1973 893 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 806 893 IPR013083 -
Lcy11g1973 893 SMART Ubox_2 810 889 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy11g1973 893 Gene3D Transferase(Phosphotransferase) domain 1 591 790 - -
Lcy11g1973 893 Gene3D Phosphorylase Kinase; domain 1 499 590 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0193 Lcy-Chr11:2190263 Lcy11g1973 Lcy-Chr11:43345551 1.93E-137 dispersed
Lcy11g1973 Lcy-Chr11:43345551 Lcy8g1810 Lcy-Chr8:44496558 4.21E-148 dispersed
Lcy13g0694 Lcy-Chr13:10030075 Lcy11g1973 Lcy-Chr11:43345551 2.63E-95 transposed
Lcy1g0837 Lcy-Chr1:7153232 Lcy11g1973 Lcy-Chr11:43345551 1.41E-68 transposed
Lcy11g1973 Lcy-Chr11:43345551 Lcy6g0154 Lcy-Chr6:1441984 1.86E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65477 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1973 - - - 0.0