Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1988 ATGGGGACTGGCGAATCTGGTGACTACCCCTGCAAGTTACTTAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCGCTGCGAATCTGGTGACTACCCCTGCAGTGCGCTCGACTCCTTCGACCTTCACCTTTCCCTCCCAATCGCAAAAGCCGCTCCCAGCCTCTCTGCCGCCGTTCTAACCACCGTTGCTCGCACTTCCAGCTGCAGCCAAGCCAAGAAGATTTGGATGGCGCTTTTCATTCTGAAGTCGATTTGTAGTTCATCAAGCACTTGTTCCTCCTTTCATTCTTACAAGTCTTACACAAAGATTTCCGAGTACATTGACCGGGTTCTTAGACCAAGTGCTGTTGTAAATAAAAAATACTATGAAGATGAATCTCACAGCTTGAAGAACACCCCACGTACTGGTTTACTAAGAACAACCTCTGTATGTCGTTTTCATATCCCCATTTATGGTACACATAGCATTGGTACAATTTTGCCCGCATCGTCAGTGAAATTTTGGAACACTATCCCTCTTACGTCACTCGACCATTTGTCAAACCCTCGATTATATTCATCTGCCTCTAGCAGTAAAGTGGATGTAACTAGAGATGTTCCAGCAGCTTCTTCTGGTGTTGAGGCGGATATCAGTAATCCCCCTGATCTTGGAAGGGACTGGCTTGAAAGAGTTAAGGATGTCTGGCAAAGTGTTGTAGATGCAACATCTTTTACTGGGCAAAAGGCTAGAGAAGTGTCTGATGAATTGTCTCCTCATGCAGATAAGCTATTTGATTCACATCCATATCTAAAAAATGTAATAGTTCCTCTAAGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTCCATAAGTATTCAATGCGAGGTCCTGTTGCGATACTCTCCATACCTGTTGAAGAAATTCCTTATGAGAAAAGTTTTTGGGGTGCCTTAGAGGATCCTTTGCTATATCTTGTCACATTTTTTGCAGTTTCTCAAATTGGTACGATGGTTGCACCAACATCGATGACATCAGAGTTTGTTACACAGGCGTGCAGAGGGGCTGTCATTCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAAGAAATGTGTTATCTCGAGCTTTAGCCTCCCAGACTTTTGCAGGGCTTAATCGGAAATGGTTACTTACACTAGACAAGGTTTCATCTGTTGGCCTTTTTGCAATTGGATTAATGGGTTTGGCCGAGGCATCTGGGGTGGCTGTTCAATCTATGTTAACTGTTGGTGGCATTGGAGGAGTGACCATTGCTTTTGCTGCGAGGGATATACGTGGGAATATTTTAAGTGGCTTAAGAATGCGGTTTTCACAACACTTCTCACTTGGAGATACGATTAAGGCTGGTGCTATTGAAGGTAAAGTTGTGGAAATGGGACTCATGACAACATCATTATTAAGTGCTGAACAATTTTCAATCGTTGTTCCAAATTCTCTCCTTTATGGCCAGGAAATTATAAATGAGTCGCGGGGGCAGTGTCATGCAATCACCAAGAAAATTCCTTTGCAAGTAGATGATCTTAGTACCATTTCTCAGATATCAGATAATATTAAGAGTATGCTAAGATCTCACCCTCAAGTGTTCTTGGGCAAGGAGGCTCCTGATTGCTTCCCCTCTCAAGTTGAAAGTACTTGGGCAGAATTGACAATTAGTTGCAACCTTAAGAAGATGGGTAAAGAAGAATTTTTCTCTACCCAGCAAGATATTCTTCTTCAGTCGATAAAGATCATCAAGGAAAATGGTCATGTCAGATTGGACGAACCAGTGATGATGAACAAGAGTGATTTATGCATGAAAGGGACTGAAGAATTTCAGAGACCACAAAAGCTCCAATCGGTGGTGTTCGTCGGATTCAGAAGCGAGTGCAAGCTCACAAAGGATCAAATTCACGAGATAGCTCGTGGAGGGGAGCTCTCGGAGCTGCCATTTTTGTGGTCTCTGAGAAAACCAGTCCGGACGGCGGAGGAGGATTCCGACGATCTCCCGGCTGGATTCCCGGAAAGGACGGCGGAGAGAGGGATTGTGAGTATGGGATGGGCGCCGCAGATGGAGATTTTGGGTCGGTTCGTCGCACGGCAGACGGCACCTTCAACCATTGCTTGCACCTTCGTTCGCTGCCGTTCAATCACCGCCGCCATGCACCTTCGCTTTCCCCGCACCTTCGCTCGCAGCCTAGCACCTCTGTCGATTTATAGTTCATCCAGCACTTTTTTGAAGCTGCCCTCATTTCAGTCTTACAAGTCTTACACAAAGATTCCCGAGTACGTTGACCGGGTTCTCAGACCAAGTGCTGTTGTAAATAAAAAATACTATGAAGGCTTGAAGAACACCCCACGTACTGGTTTACTAAGAACAGCCTCTGTATGTCCTTTTCATATCCTCGGTTATGGTACACATAGCATTGGTACATTTTTGCCGACATCGTCAGTGAAATTTTGGAACACTATCCCTCTTACGTCACTCTGCCATTTGTCAAATCCTCGATTATATTCATCTGCTTCTAGCAGGAAAGTGGATGTAACTGGAGATGTTCCAGCAGCTTCTTCCGGTGTTGAGGCGGATATCAGTAATCCCTCTGATCTTGGAAGGGACTGGCTTGAAAGAGTTAAGGATGTCTGGCAAAGTGCTGTAGATGCAACATCTTTTACTGGGCAAAAGGCTAGAGAAATGTCTGATGAATTGTCTCCTCATGTAGATAAGCTATTTGATTCACATCCATATCTAAAAAATGTAATAGTTCCTGTAAGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGAAGATTCCATAAGTATTCAATGCGAGGTCCTGTTGCGATACTGTCTGGGAGCTTACCTGTCGAAGAAATTCCTTATGAGAAAAGTTTTTGGGGTGCCTTAGAGGATCCTTTGCGATATCTTGTCACATTTTTTGCATTTTCTCAAATTGGTACGATGGTTGCACCAACCGCCGTGGCATCAGAGTTTGTTACACAGGCGTGCAGAGGGGCTGTCATTCTTTCCTTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCTTTAGCCTCCCAGACTTTTGCAGGGCTTGATCGGGAAAGGTTACTTACACTAGACAAGGTTTCATCTGTTGGCCTTTTTGCAATTGGATTAATTGCTTTGGCCGAGGCATCTGGGGTGGCTGTTCAATCTATGTTAACGGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTGCTAGGGATATACTTGGGAATATTTTCAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTCGGAGATACGATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCATTATTAAGTGCTGAAAAATTTCCAATGGTCGTTCCAAATTCTCTGTTTTCTAGCCAGCTTGATTTTGCCCCTGAGGGATTTGCTCATTCGGCAATTGTAAATAAGTCGCGGGCGCAGTGGCGTGCAATCACCAAGAAAATCCCTTTGCAAGTGAATGATCTTAGTACGATTTCTCAGATATCAGATAATATTAAGAGTATGCTTAGATCTCACCCTAAAGTGTTCTTGGGCAAGGAGGCTCCTTATTGCTTCCTCTCTCGAGTTGAAAGTACATATACAGAATTGACAATTGGTTGCAACCTTAAAAAGATGGGCAAAGAAGAACTTTTCTCTACCGAACAAGATATTCTCCTTCAATCTGTACAGATCATTAAGGAAAATGGTGCAACCTTAGGCAGCACCATGTCAGATTGGACAAACAAGTGA 3861 43.98 MGTGESGDYPCKLLRSPNKMGTGLAGVHRCESGDYPCSALDSFDLHLSLPIAKAAPSLSAAVLTTVARTSSCSQAKKIWMALFILKSICSSSSTCSSFHSYKSYTKISEYIDRVLRPSAVVNKKYYEDESHSLKNTPRTGLLRTTSVCRFHIPIYGTHSIGTILPASSVKFWNTIPLTSLDHLSNPRLYSSASSSKVDVTRDVPAASSGVEADISNPPDLGRDWLERVKDVWQSVVDATSFTGQKAREVSDELSPHADKLFDSHPYLKNVIVPLSMTLTATLLAWVVMPRLLRRFHKYSMRGPVAILSIPVEEIPYEKSFWGALEDPLLYLVTFFAVSQIGTMVAPTSMTSEFVTQACRGAVILSLVWFIYRWKRNVLSRALASQTFAGLNRKWLLTLDKVSSVGLFAIGLMGLAEASGVAVQSMLTVGGIGGVTIAFAARDIRGNILSGLRMRFSQHFSLGDTIKAGAIEGKVVEMGLMTTSLLSAEQFSIVVPNSLLYGQEIINESRGQCHAITKKIPLQVDDLSTISQISDNIKSMLRSHPQVFLGKEAPDCFPSQVESTWAELTISCNLKKMGKEEFFSTQQDILLQSIKIIKENGHVRLDEPVMMNKSDLCMKGTEEFQRPQKLQSVVFVGFRSECKLTKDQIHEIARGGELSELPFLWSLRKPVRTAEEDSDDLPAGFPERTAERGIVSMGWAPQMEILGRFVARQTAPSTIACTFVRCRSITAAMHLRFPRTFARSLAPLSIYSSSSTFLKLPSFQSYKSYTKIPEYVDRVLRPSAVVNKKYYEGLKNTPRTGLLRTASVCPFHILGYGTHSIGTFLPTSSVKFWNTIPLTSLCHLSNPRLYSSASSRKVDVTGDVPAASSGVEADISNPSDLGRDWLERVKDVWQSAVDATSFTGQKAREMSDELSPHVDKLFDSHPYLKNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRGPVAILSGSLPVEEIPYEKSFWGALEDPLRYLVTFFAFSQIGTMVAPTAVASEFVTQACRGAVILSFVWFIYRWKTNVLSRALASQTFAGLDRERLLTLDKVSSVGLFAIGLIALAEASGVAVQSMLTVGGIGGVATAFAARDILGNIFSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPMVVPNSLFSSQLDFAPEGFAHSAIVNKSRAQWRAITKKIPLQVNDLSTISQISDNIKSMLRSHPKVFLGKEAPYCFLSRVESTYTELTIGCNLKKMGKEELFSTEQDILLQSVQIIKENGATLGSTMSDWTNK 1286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 43483608 43498999 + Maker00031806 Lcy11g1988 647889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1988 1286 Gene3D Glycogen Phosphorylase B; 623 706 - -
Lcy11g1988 1286 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 358 441 IPR011014 GO:0016020(InterPro)
Lcy11g1988 1286 Pfam Mechanosensitive ion channel, beta-domain 445 509 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g1988 1286 Pfam Mechanosensitive ion channel, beta-domain 1104 1163 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g1988 1286 SUPERFAMILY Sm-like ribonucleoproteins 1104 1163 IPR010920 -
Lcy11g1988 1286 Gene3D - 1016 1118 - -
Lcy11g1988 1286 Gene3D - 354 455 - -
Lcy11g1988 1286 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 619 705 - -
Lcy11g1988 1286 Gene3D - 459 506 IPR023408 -
Lcy11g1988 1286 Gene3D - 1120 1165 IPR023408 -
Lcy11g1988 1286 SUPERFAMILY Sm-like ribonucleoproteins 443 507 IPR010920 -
Lcy11g1988 1286 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 1020 1103 IPR011014 GO:0016020(InterPro)
Lcy11g1988 1286 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 899 1282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1988 K22047 - - csv:101220483 827.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1988 Lcy-Chr11:43483608 Lcy11g1985 Lcy-Chr11:43449380 3.21E-17 dispersed
Lcy11g1988 Lcy-Chr11:43483608 Lcy11g1990 Lcy-Chr11:43510226 5.58E-13 proximal
Lcy11g1988 Lcy-Chr11:43483608 Lcy11g1991 Lcy-Chr11:43516112 4.33E-39 proximal
Lcy11g1988 Lcy-Chr11:43483608 Lcy11g1989 Lcy-Chr11:43501909 1.25E-30 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1988 . 849 1284 Mechanosensitive Ion Channel Family AT4G00290 62.8 2.0e-152 536.6
Lcy6g1111 . 93 801 Mechanosensitive Ion Channel Family AT5G10490 55.3 4.0e-193 672.2
Lcy13g1478 . 9 309 Mechanosensitive Ion Channel Family AT5G10490 58.1 2.5e-86 317.4
Lcy6g1111 . 122 769 Mechanosensitive Ion Channel Family AT1G58200 51.7 3.3e-166 582.8
Lcy13g1478 . 9 309 Mechanosensitive Ion Channel Family AT1G58200 62.5 7.6e-99 359.0
Lcy8g1282 . 49 935 Mechanosensitive Ion Channel Family AT1G53470 56.2 2.5e-267 919.1
Lcy3g0859 . 93 946 Mechanosensitive Ion Channel Family AT1G53470 51.7 7.1e-238 821.2
Lcy8g1282 . 48 930 Mechanosensitive Ion Channel Family AT3G14810 53.7 2.0e-250 862.8
Lcy8g1282 . 50 935 Mechanosensitive Ion Channel Family AT1G78610 60.4 2.8e-292 1001.9
Lcy3g0859 . 63 944 Mechanosensitive Ion Channel Family AT1G78610 57.1 8.0e-271 930.6
Lcy8g1282 . 226 931 Mechanosensitive Ion Channel Family AT2G17000 61.2 5.2e-238 821.6
Lcy3g0859 . 273 943 Mechanosensitive Ion Channel Family AT2G17000 59.8 2.3e-225 779.6
Lcy8g1282 . 1 674 Mechanosensitive Ion Channel Family AT2G17010 50.6 2.5e-163 573.2
Lcy9g1946 . 69 722 Mechanosensitive Ion Channel Family AT5G19520 53.2 2.7e-182 636.3
Lcy2g0950 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 7.0e-199 691.4
Lcy9g1946 . 64 722 Mechanosensitive Ion Channel Family AT5G12080 56.5 1.7e-197 686.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33