Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1988 ATGGGGACTGGCGAATCTGGTGACTACCCCTGCAAGTTACTTAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCGCTGCGAATCTGGTGACTACCCCTGCAGTGCGCTCGACTCCTTCGACCTTCACCTTTCCCTCCCAATCGCAAAAGCCGCTCCCAGCCTCTCTGCCGCCGTTCTAACCACCGTTGCTCGCACTTCCAGCTGCAGCCAAGCCAAGAAGATTTGGATGGCGCTTTTCATTCTGAAGTCGATTTGTAGTTCATCAAGCACTTGTTCCTCCTTTCATTCTTACAAGTCTTACACAAAGATTTCCGAGTACATTGACCGGGTTCTTAGACCAAGTGCTGTTGTAAATAAAAAATACTATGAAGATGAATCTCACAGCTTGAAGAACACCCCACGTACTGGTTTACTAAGAACAACCTCTGTATGTCGTTTTCATATCCCCATTTATGGTACACATAGCATTGGTACAATTTTGCCCGCATCGTCAGTGAAATTTTGGAACACTATCCCTCTTACGTCACTCGACCATTTGTCAAACCCTCGATTATATTCATCTGCCTCTAGCAGTAAAGTGGATGTAACTAGAGATGTTCCAGCAGCTTCTTCTGGTGTTGAGGCGGATATCAGTAATCCCCCTGATCTTGGAAGGGACTGGCTTGAAAGAGTTAAGGATGTCTGGCAAAGTGTTGTAGATGCAACATCTTTTACTGGGCAAAAGGCTAGAGAAGTGTCTGATGAATTGTCTCCTCATGCAGATAAGCTATTTGATTCACATCCATATCTAAAAAATGTAATAGTTCCTCTAAGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGGAGATTCCATAAGTATTCAATGCGAGGTCCTGTTGCGATACTCTCCATACCTGTTGAAGAAATTCCTTATGAGAAAAGTTTTTGGGGTGCCTTAGAGGATCCTTTGCTATATCTTGTCACATTTTTTGCAGTTTCTCAAATTGGTACGATGGTTGCACCAACATCGATGACATCAGAGTTTGTTACACAGGCGTGCAGAGGGGCTGTCATTCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAAGAAATGTGTTATCTCGAGCTTTAGCCTCCCAGACTTTTGCAGGGCTTAATCGGAAATGGTTACTTACACTAGACAAGGTTTCATCTGTTGGCCTTTTTGCAATTGGATTAATGGGTTTGGCCGAGGCATCTGGGGTGGCTGTTCAATCTATGTTAACTGTTGGTGGCATTGGAGGAGTGACCATTGCTTTTGCTGCGAGGGATATACGTGGGAATATTTTAAGTGGCTTAAGAATGCGGTTTTCACAACACTTCTCACTTGGAGATACGATTAAGGCTGGTGCTATTGAAGGTAAAGTTGTGGAAATGGGACTCATGACAACATCATTATTAAGTGCTGAACAATTTTCAATCGTTGTTCCAAATTCTCTCCTTTATGGCCAGGAAATTATAAATGAGTCGCGGGGGCAGTGTCATGCAATCACCAAGAAAATTCCTTTGCAAGTAGATGATCTTAGTACCATTTCTCAGATATCAGATAATATTAAGAGTATGCTAAGATCTCACCCTCAAGTGTTCTTGGGCAAGGAGGCTCCTGATTGCTTCCCCTCTCAAGTTGAAAGTACTTGGGCAGAATTGACAATTAGTTGCAACCTTAAGAAGATGGGTAAAGAAGAATTTTTCTCTACCCAGCAAGATATTCTTCTTCAGTCGATAAAGATCATCAAGGAAAATGGTCATGTCAGATTGGACGAACCAGTGATGATGAACAAGAGTGATTTATGCATGAAAGGGACTGAAGAATTTCAGAGACCACAAAAGCTCCAATCGGTGGTGTTCGTCGGATTCAGAAGCGAGTGCAAGCTCACAAAGGATCAAATTCACGAGATAGCTCGTGGAGGGGAGCTCTCGGAGCTGCCATTTTTGTGGTCTCTGAGAAAACCAGTCCGGACGGCGGAGGAGGATTCCGACGATCTCCCGGCTGGATTCCCGGAAAGGACGGCGGAGAGAGGGATTGTGAGTATGGGATGGGCGCCGCAGATGGAGATTTTGGGTCGGTTCGTCGCACGGCAGACGGCACCTTCAACCATTGCTTGCACCTTCGTTCGCTGCCGTTCAATCACCGCCGCCATGCACCTTCGCTTTCCCCGCACCTTCGCTCGCAGCCTAGCACCTCTGTCGATTTATAGTTCATCCAGCACTTTTTTGAAGCTGCCCTCATTTCAGTCTTACAAGTCTTACACAAAGATTCCCGAGTACGTTGACCGGGTTCTCAGACCAAGTGCTGTTGTAAATAAAAAATACTATGAAGGCTTGAAGAACACCCCACGTACTGGTTTACTAAGAACAGCCTCTGTATGTCCTTTTCATATCCTCGGTTATGGTACACATAGCATTGGTACATTTTTGCCGACATCGTCAGTGAAATTTTGGAACACTATCCCTCTTACGTCACTCTGCCATTTGTCAAATCCTCGATTATATTCATCTGCTTCTAGCAGGAAAGTGGATGTAACTGGAGATGTTCCAGCAGCTTCTTCCGGTGTTGAGGCGGATATCAGTAATCCCTCTGATCTTGGAAGGGACTGGCTTGAAAGAGTTAAGGATGTCTGGCAAAGTGCTGTAGATGCAACATCTTTTACTGGGCAAAAGGCTAGAGAAATGTCTGATGAATTGTCTCCTCATGTAGATAAGCTATTTGATTCACATCCATATCTAAAAAATGTAATAGTTCCTGTAAGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGAAGATTCCATAAGTATTCAATGCGAGGTCCTGTTGCGATACTGTCTGGGAGCTTACCTGTCGAAGAAATTCCTTATGAGAAAAGTTTTTGGGGTGCCTTAGAGGATCCTTTGCGATATCTTGTCACATTTTTTGCATTTTCTCAAATTGGTACGATGGTTGCACCAACCGCCGTGGCATCAGAGTTTGTTACACAGGCGTGCAGAGGGGCTGTCATTCTTTCCTTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCTTTAGCCTCCCAGACTTTTGCAGGGCTTGATCGGGAAAGGTTACTTACACTAGACAAGGTTTCATCTGTTGGCCTTTTTGCAATTGGATTAATTGCTTTGGCCGAGGCATCTGGGGTGGCTGTTCAATCTATGTTAACGGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTGCTAGGGATATACTTGGGAATATTTTCAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTCGGAGATACGATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCATTATTAAGTGCTGAAAAATTTCCAATGGTCGTTCCAAATTCTCTGTTTTCTAGCCAGCTTGATTTTGCCCCTGAGGGATTTGCTCATTCGGCAATTGTAAATAAGTCGCGGGCGCAGTGGCGTGCAATCACCAAGAAAATCCCTTTGCAAGTGAATGATCTTAGTACGATTTCTCAGATATCAGATAATATTAAGAGTATGCTTAGATCTCACCCTAAAGTGTTCTTGGGCAAGGAGGCTCCTTATTGCTTCCTCTCTCGAGTTGAAAGTACATATACAGAATTGACAATTGGTTGCAACCTTAAAAAGATGGGCAAAGAAGAACTTTTCTCTACCGAACAAGATATTCTCCTTCAATCTGTACAGATCATTAAGGAAAATGGTGCAACCTTAGGCAGCACCATGTCAGATTGGACAAACAAGTGA 3861 43.98 MGTGESGDYPCKLLRSPNKMGTGLAGVHRCESGDYPCSALDSFDLHLSLPIAKAAPSLSAAVLTTVARTSSCSQAKKIWMALFILKSICSSSSTCSSFHSYKSYTKISEYIDRVLRPSAVVNKKYYEDESHSLKNTPRTGLLRTTSVCRFHIPIYGTHSIGTILPASSVKFWNTIPLTSLDHLSNPRLYSSASSSKVDVTRDVPAASSGVEADISNPPDLGRDWLERVKDVWQSVVDATSFTGQKAREVSDELSPHADKLFDSHPYLKNVIVPLSMTLTATLLAWVVMPRLLRRFHKYSMRGPVAILSIPVEEIPYEKSFWGALEDPLLYLVTFFAVSQIGTMVAPTSMTSEFVTQACRGAVILSLVWFIYRWKRNVLSRALASQTFAGLNRKWLLTLDKVSSVGLFAIGLMGLAEASGVAVQSMLTVGGIGGVTIAFAARDIRGNILSGLRMRFSQHFSLGDTIKAGAIEGKVVEMGLMTTSLLSAEQFSIVVPNSLLYGQEIINESRGQCHAITKKIPLQVDDLSTISQISDNIKSMLRSHPQVFLGKEAPDCFPSQVESTWAELTISCNLKKMGKEEFFSTQQDILLQSIKIIKENGHVRLDEPVMMNKSDLCMKGTEEFQRPQKLQSVVFVGFRSECKLTKDQIHEIARGGELSELPFLWSLRKPVRTAEEDSDDLPAGFPERTAERGIVSMGWAPQMEILGRFVARQTAPSTIACTFVRCRSITAAMHLRFPRTFARSLAPLSIYSSSSTFLKLPSFQSYKSYTKIPEYVDRVLRPSAVVNKKYYEGLKNTPRTGLLRTASVCPFHILGYGTHSIGTFLPTSSVKFWNTIPLTSLCHLSNPRLYSSASSRKVDVTGDVPAASSGVEADISNPSDLGRDWLERVKDVWQSAVDATSFTGQKAREMSDELSPHVDKLFDSHPYLKNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRGPVAILSGSLPVEEIPYEKSFWGALEDPLRYLVTFFAFSQIGTMVAPTAVASEFVTQACRGAVILSFVWFIYRWKTNVLSRALASQTFAGLDRERLLTLDKVSSVGLFAIGLIALAEASGVAVQSMLTVGGIGGVATAFAARDILGNIFSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPMVVPNSLFSSQLDFAPEGFAHSAIVNKSRAQWRAITKKIPLQVNDLSTISQISDNIKSMLRSHPKVFLGKEAPYCFLSRVESTYTELTIGCNLKKMGKEELFSTEQDILLQSVQIIKENGATLGSTMSDWTNK 1286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 43483608 43498999 + Maker00031806 Lcy11g1988 647889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1988 1286 Gene3D Glycogen Phosphorylase B; 623 706 - -
Lcy11g1988 1286 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 358 441 IPR011014 GO:0016020(InterPro)
Lcy11g1988 1286 Pfam Mechanosensitive ion channel, beta-domain 445 509 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g1988 1286 Pfam Mechanosensitive ion channel, beta-domain 1104 1163 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g1988 1286 SUPERFAMILY Sm-like ribonucleoproteins 1104 1163 IPR010920 -
Lcy11g1988 1286 Gene3D - 1016 1118 - -
Lcy11g1988 1286 Gene3D - 354 455 - -
Lcy11g1988 1286 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 619 705 - -
Lcy11g1988 1286 Gene3D - 459 506 IPR023408 -
Lcy11g1988 1286 Gene3D - 1120 1165 IPR023408 -
Lcy11g1988 1286 SUPERFAMILY Sm-like ribonucleoproteins 443 507 IPR010920 -
Lcy11g1988 1286 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 1020 1103 IPR011014 GO:0016020(InterPro)
Lcy11g1988 1286 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 899 1282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1988 Lcy-Chr11:43483608 Lcy11g1985 Lcy-Chr11:43449380 3.21E-17 dispersed
Lcy11g1988 Lcy-Chr11:43483608 Lcy11g1990 Lcy-Chr11:43510226 5.58E-13 proximal
Lcy11g1988 Lcy-Chr11:43483608 Lcy11g1991 Lcy-Chr11:43516112 4.33E-39 proximal
Lcy11g1988 Lcy-Chr11:43483608 Lcy11g1989 Lcy-Chr11:43501909 1.25E-30 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1988 K22047 - csv:101220483 827.009