Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g1993 ATTCGCCGGAATCCTCCATTGCTGGGATTTTCCGATGAGGTCAATGCCCTTAAACCCATTTATTTGATTTCTTTGATTCCTCTTTTTCTCGCTTTCAATCGATCGAAGAAGAAGAAGAAGAAGAGAAAGAAGAAGATGTCTGTTTATGATGCTGCATTTTTCAACACGGAGCTCTCTAAACCGACCTCCATTTTCGGCCTTCGTCTCTGGGTTGTAATCGGAATCTTAGTCGGAGCCTTAATAGTTCTCGCACTGTTTCTTCTTTCACTCTGCCTCACTTCTCGCAAGCGGAATCGCCATAAGAACCAAATCCGTTTCCCTAAGTCCACAACCGACCATTCTCCTCCCGCCGTTTCGAAAGAGATCCAGGAAATCGTCCATCACGCGGTGCCGGATCATCACCACCATGTTCAGCCGGAAATTCATGTCGAGATCGGAAAATTGGAGCATCGGGTTGTTTTTTCTGACAGACCTTCTAGTGGTGAGAGCAGAGGCGCTGTGAGTGAAACTGCTTCTTTTGGATCTGGTACTGTTGGGCCTGAGGTTTCGCACTTGGGTTGGGGCAGATGGTATACTCTGAGAGAGCTCGAGGCGGCCACTAATGGCTTGTGTGAAGAGAACGTGATTGGAGAAGGTGGGTATGGGATCGTGTATTTAGGCATTTTAGGAGATGGTACCAGAATTGCTATCAAGAACCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTCAAAGTGGAAGTTGAAGCAATTGGACGAGTAAGACACAAGAATCTTGTCAGATTGCTGGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTATGAGTACGTTAACAATGGTAATCTAGACCAATGGCTTCATGGTGATGTTGGGGATGTGAGCCCCTTGACGTGGGAGATTCGTGTTAACATCATACTCGGAACAGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCATCGTGATGTAAAGTCAAGCAACATACTGCTTGATCGTCAGTGGAATGCTAAAGTATCTGATTTTGGGCTGGCCAAGCTTCTTTGTTCAGAAAGGAGCTACGTGACAACTCGGGTAATGGGTACATTCGGCTATGTTGCACCCGAGTACGCTTGCACAGGAATGTTGAATGAGAAGAGTGATGTTTATAGTTTTGGAATTCTAATTATGGAGATAATTTCTGGGCGGAGCCCTGTTGATTATAGTAGACCCCAAGGAGAGGTAAATTTGGTGGATTGGTTGAAATCAATGGTTGGAGACAGAAAATCTGAGGAAGTTGTAGACCCCAAGTTGCCTGAGAAGCCTCCATCAAAAGCTCTCAAACGTGTTTTGCTGGTTGCTCTTCGGTGTGTTGATCCTGATGCTACGAAGAGGCCGAAAATGGGACATGTCATCCACATGCTTGAGGCAGATAATTTGCTGTGTAGTGAAGAGCAGCGAGTTGGTAGGGATTCTTCCCACTCAATTCAAGGCCATCAACATGAGAACCGGGCCGTTCCAAGACGAGTTAACAACCAGAAAGATGAAGGAACATCTTCTAATATAAGTGAAGGTGACAGTGATGGACACATTCAACAATCAACAAGTTTGGTGGAGACAACTACAACTCCAACTCCTCCTTCATGTGCCCTTTTGCTCTGTTCTGACTGGACCAGTAAGGCTAAGATGTGGACTAGAACTCAGGCATTTGTCATCGAAAACACGACGAGATTTTGTCCGATTTTCACATTAGTCTACCCAAAATTTGGTCCTAAGCTGGCTGTGGATGTTTCTGAAGGAATCAATTCTTTGGTTTATCTGCAACCATACACTGTCCTTTCAAGCACTTGCACTCTGAAACTGAATGCTTTTGGGAGCTCCTTCAAAACCCCTTATCCAAAGCTTGATTTTGGAGTAAGTTTCAAAGGGCTTTTGGAACTTTATGAAGTTGGGCCATTTCTTTAA 1962 44.8 IRRNPPLLGFSDEVNALKPIYLISLIPLFLAFNRSKKKKKKRKKKMSVYDAAFFNTELSKPTSIFGLRLWVVIGILVGALIVLALFLLSLCLTSRKRNRHKNQIRFPKSTTDHSPPAVSKEIQEIVHHAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGAVSETASFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGILGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKSMVGDRKSEEVVDPKLPEKPPSKALKRVLLVALRCVDPDATKRPKMGHVIHMLEADNLLCSEEQRVGRDSSHSIQGHQHENRAVPRRVNNQKDEGTSSNISEGDSDGHIQQSTSLVETTTTPTPPSCALLLCSDWTSKAKMWTRTQAFVIENTTRFCPIFTLVYPKFGPKLAVDVSEGINSLVYLQPYTVLSSTCTLKLNAFGSSFKTPYPKLDFGVSFKGLLELYEVGPFL 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 43535757 43539008 - Maker00031760 Lcy11g1993 647894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g1993 653 SUPERFAMILY Protein kinase-like (PK-like) 182 475 IPR011009 -
Lcy11g1993 653 Gene3D Phosphorylase Kinase; domain 1 185 278 - -
Lcy11g1993 653 PANTHER OS01G0323000 PROTEIN 53 514 IPR052232 -
Lcy11g1993 653 MobiDBLite consensus disorder prediction 156 176 - -
Lcy11g1993 653 MobiDBLite consensus disorder prediction 511 529 - -
Lcy11g1993 653 CDD STKc_IRAK 209 475 - -
Lcy11g1993 653 ProSitePatterns Protein kinases ATP-binding region signature. 209 231 IPR017441 GO:0005524(InterPro)
Lcy11g1993 653 Gene3D Transferase(Phosphotransferase) domain 1 279 490 - -
Lcy11g1993 653 Pfam Protein tyrosine and serine/threonine kinase 206 473 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1993 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 325 337 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g1993 653 MobiDBLite consensus disorder prediction 485 529 - -
Lcy11g1993 653 SMART serkin_6 203 474 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g1993 653 MobiDBLite consensus disorder prediction 161 176 - -
Lcy11g1993 653 FunFam Putative receptor-like serine/threonine-protein kinase 279 489 - -
Lcy11g1993 653 MobiDBLite consensus disorder prediction 485 510 - -
Lcy11g1993 653 FunFam Probable serine/threonine-protein kinase At1g01540 183 278 - -
Lcy11g1993 653 ProSiteProfiles Protein kinase domain profile. 203 480 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1993 Lcy-Chr11:43535757 Lcy1g0980 Lcy-Chr1:8644986 2.64E-205 dispersed
Lcy3g1021 Lcy-Chr3:34576337 Lcy11g1993 Lcy-Chr11:43535757 6.33E-167 transposed
Lcy11g1993 Lcy-Chr11:43535757 Lcy6g0133 Lcy-Chr6:1179313 1.22E-81 wgd
Lcy11g1993 Lcy-Chr11:43535757 Lcy6g0861 Lcy-Chr6:8709679 3.72E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65479 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g1993 - - - 0.0