Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g1993 | ATTCGCCGGAATCCTCCATTGCTGGGATTTTCCGATGAGGTCAATGCCCTTAAACCCATTTATTTGATTTCTTTGATTCCTCTTTTTCTCGCTTTCAATCGATCGAAGAAGAAGAAGAAGAAGAGAAAGAAGAAGATGTCTGTTTATGATGCTGCATTTTTCAACACGGAGCTCTCTAAACCGACCTCCATTTTCGGCCTTCGTCTCTGGGTTGTAATCGGAATCTTAGTCGGAGCCTTAATAGTTCTCGCACTGTTTCTTCTTTCACTCTGCCTCACTTCTCGCAAGCGGAATCGCCATAAGAACCAAATCCGTTTCCCTAAGTCCACAACCGACCATTCTCCTCCCGCCGTTTCGAAAGAGATCCAGGAAATCGTCCATCACGCGGTGCCGGATCATCACCACCATGTTCAGCCGGAAATTCATGTCGAGATCGGAAAATTGGAGCATCGGGTTGTTTTTTCTGACAGACCTTCTAGTGGTGAGAGCAGAGGCGCTGTGAGTGAAACTGCTTCTTTTGGATCTGGTACTGTTGGGCCTGAGGTTTCGCACTTGGGTTGGGGCAGATGGTATACTCTGAGAGAGCTCGAGGCGGCCACTAATGGCTTGTGTGAAGAGAACGTGATTGGAGAAGGTGGGTATGGGATCGTGTATTTAGGCATTTTAGGAGATGGTACCAGAATTGCTATCAAGAACCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTCAAAGTGGAAGTTGAAGCAATTGGACGAGTAAGACACAAGAATCTTGTCAGATTGCTGGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTATGAGTACGTTAACAATGGTAATCTAGACCAATGGCTTCATGGTGATGTTGGGGATGTGAGCCCCTTGACGTGGGAGATTCGTGTTAACATCATACTCGGAACAGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCATCGTGATGTAAAGTCAAGCAACATACTGCTTGATCGTCAGTGGAATGCTAAAGTATCTGATTTTGGGCTGGCCAAGCTTCTTTGTTCAGAAAGGAGCTACGTGACAACTCGGGTAATGGGTACATTCGGCTATGTTGCACCCGAGTACGCTTGCACAGGAATGTTGAATGAGAAGAGTGATGTTTATAGTTTTGGAATTCTAATTATGGAGATAATTTCTGGGCGGAGCCCTGTTGATTATAGTAGACCCCAAGGAGAGGTAAATTTGGTGGATTGGTTGAAATCAATGGTTGGAGACAGAAAATCTGAGGAAGTTGTAGACCCCAAGTTGCCTGAGAAGCCTCCATCAAAAGCTCTCAAACGTGTTTTGCTGGTTGCTCTTCGGTGTGTTGATCCTGATGCTACGAAGAGGCCGAAAATGGGACATGTCATCCACATGCTTGAGGCAGATAATTTGCTGTGTAGTGAAGAGCAGCGAGTTGGTAGGGATTCTTCCCACTCAATTCAAGGCCATCAACATGAGAACCGGGCCGTTCCAAGACGAGTTAACAACCAGAAAGATGAAGGAACATCTTCTAATATAAGTGAAGGTGACAGTGATGGACACATTCAACAATCAACAAGTTTGGTGGAGACAACTACAACTCCAACTCCTCCTTCATGTGCCCTTTTGCTCTGTTCTGACTGGACCAGTAAGGCTAAGATGTGGACTAGAACTCAGGCATTTGTCATCGAAAACACGACGAGATTTTGTCCGATTTTCACATTAGTCTACCCAAAATTTGGTCCTAAGCTGGCTGTGGATGTTTCTGAAGGAATCAATTCTTTGGTTTATCTGCAACCATACACTGTCCTTTCAAGCACTTGCACTCTGAAACTGAATGCTTTTGGGAGCTCCTTCAAAACCCCTTATCCAAAGCTTGATTTTGGAGTAAGTTTCAAAGGGCTTTTGGAACTTTATGAAGTTGGGCCATTTCTTTAA | 1962 | 44.8 | IRRNPPLLGFSDEVNALKPIYLISLIPLFLAFNRSKKKKKKRKKKMSVYDAAFFNTELSKPTSIFGLRLWVVIGILVGALIVLALFLLSLCLTSRKRNRHKNQIRFPKSTTDHSPPAVSKEIQEIVHHAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGAVSETASFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGILGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKSMVGDRKSEEVVDPKLPEKPPSKALKRVLLVALRCVDPDATKRPKMGHVIHMLEADNLLCSEEQRVGRDSSHSIQGHQHENRAVPRRVNNQKDEGTSSNISEGDSDGHIQQSTSLVETTTTPTPPSCALLLCSDWTSKAKMWTRTQAFVIENTTRFCPIFTLVYPKFGPKLAVDVSEGINSLVYLQPYTVLSSTCTLKLNAFGSSFKTPYPKLDFGVSFKGLLELYEVGPFL | 653 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 43535757 | 43539008 | - | Maker00031760 | Lcy11g1993 | 647894 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g1993 | 653 | SUPERFAMILY | Protein kinase-like (PK-like) | 182 | 475 | IPR011009 | - | |
Lcy11g1993 | 653 | Gene3D | Phosphorylase Kinase; domain 1 | 185 | 278 | - | - | |
Lcy11g1993 | 653 | PANTHER | OS01G0323000 PROTEIN | 53 | 514 | IPR052232 | - | |
Lcy11g1993 | 653 | MobiDBLite | consensus disorder prediction | 156 | 176 | - | - | |
Lcy11g1993 | 653 | MobiDBLite | consensus disorder prediction | 511 | 529 | - | - | |
Lcy11g1993 | 653 | CDD | STKc_IRAK | 209 | 475 | - | - | |
Lcy11g1993 | 653 | ProSitePatterns | Protein kinases ATP-binding region signature. | 209 | 231 | IPR017441 | GO:0005524(InterPro) | |
Lcy11g1993 | 653 | Gene3D | Transferase(Phosphotransferase) domain 1 | 279 | 490 | - | - | |
Lcy11g1993 | 653 | Pfam | Protein tyrosine and serine/threonine kinase | 206 | 473 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy11g1993 | 653 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 325 | 337 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy11g1993 | 653 | MobiDBLite | consensus disorder prediction | 485 | 529 | - | - | |
Lcy11g1993 | 653 | SMART | serkin_6 | 203 | 474 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g1993 | 653 | MobiDBLite | consensus disorder prediction | 161 | 176 | - | - | |
Lcy11g1993 | 653 | FunFam | Putative receptor-like serine/threonine-protein kinase | 279 | 489 | - | - | |
Lcy11g1993 | 653 | MobiDBLite | consensus disorder prediction | 485 | 510 | - | - | |
Lcy11g1993 | 653 | FunFam | Probable serine/threonine-protein kinase At1g01540 | 183 | 278 | - | - | |
Lcy11g1993 | 653 | ProSiteProfiles | Protein kinase domain profile. | 203 | 480 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1993 | Lcy-Chr11:43535757 | Lcy1g0980 | Lcy-Chr1:8644986 | 2.64E-205 | dispersed | |
Lcy3g1021 | Lcy-Chr3:34576337 | Lcy11g1993 | Lcy-Chr11:43535757 | 6.33E-167 | transposed | |
Lcy11g1993 | Lcy-Chr11:43535757 | Lcy6g0133 | Lcy-Chr6:1179313 | 1.22E-81 | wgd | |
Lcy11g1993 | Lcy-Chr11:43535757 | Lcy6g0861 | Lcy-Chr6:8709679 | 3.72E-29 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65479 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g1993 | - | - | - | 0.0 |