Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g2002 | ATGAAAATGGAAGTTGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGTGTCTTCCGCCGCTTCCACCGCCGTCACCGCCGCCGTTCCCTCTTCTGACTTTTACTCTGTTCCTTCCATTTCCAATAACTCTATCCCTCTTGCTTTTGGTAGAGACCCAACGAACCACACAAACCATTTATTCTCTCTTCAAGATCCATTTCAAGGACCCAATTGTAATTCCACTGAGGAATTGCATGAGCTTTTCAAACCCTTTTTTCACAAATCTCAACAGCCCTCTCCGCCGCCGCCTCCTCCTCCGCCGTCTGCTCCGCCGCTTCTTTCTTCTCCGGCGGGTAAAATTCTGACCCATCAGAAACAGCAGCAGAACACCCATCTCCCCAAACAGCTCCATTCTTCCCCTGTTTCTGCCCCAAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTCTGTCAAGTTCCGGCGGAGTCTCTGTCTTCGGACATTTGGGCTTGGCGAAAATATGGCCAAAAACCGATCAAGGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCCAAGGGTTGCATGGCCCGAAAGCAAGTGGAGAGGAACAGATCCGACCCCGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAATTCCCTCGCCGGCTCCACCCGTCAAAAGCCCATCACGCCGACGCCCGCCGCCGCAGAACCCGGATCCGGAAAACCCGACCCGAAACAGCCCGGTTGCTCGTCGGAAGACCAAAGTACGATCACGGAGAGCAAAGAGGAAAAAGAGGAATTATTGGCCGAAGATGAAAAAGACGACGACCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAACTCGACAGTCCAATCGCCGACGACTGCTTTTCCGACCAGTTTCCGGCGAATTTCGAGCTTCCGTGGCTGTTCAACAATGCCGCCGCCGCCGCCAGCAGCATTTAA | 1014 | 53.25 | MKMEVDWDLHAVVRGYSAVSSAASTAVTAAVPSSDFYSVPSISNNSIPLAFGRDPTNHTNHLFSLQDPFQGPNCNSTEELHELFKPFFHKSQQPSPPPPPPPPSAPPLLSSPAGKILTHQKQQQNTHLPKQLHSSPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITPTPAAAEPGSGKPDPKQPGCSSEDQSTITESKEEKEELLAEDEKDDDLGVSDLIVNDDFYVGFEELDSPIADDCFSDQFPANFELPWLFNNAAAAASSI | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 43629554 | 43632006 | + | Maker00031399 | Lcy11g2002 | 647903 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g2002 | 337 | ProSiteProfiles | WRKY domain profile. | 156 | 222 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g2002 | 337 | SUPERFAMILY | WRKY DNA-binding domain | 159 | 222 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g2002 | 337 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 7 | 275 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) | |
Lcy11g2002 | 337 | MobiDBLite | consensus disorder prediction | 115 | 138 | - | - | |
Lcy11g2002 | 337 | Pfam | WRKY DNA -binding domain | 163 | 220 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g2002 | 337 | Gene3D | WRKY domain | 145 | 215 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g2002 | 337 | MobiDBLite | consensus disorder prediction | 216 | 287 | - | - | |
Lcy11g2002 | 337 | MobiDBLite | consensus disorder prediction | 91 | 109 | - | - | |
Lcy11g2002 | 337 | SMART | WRKY_cls | 161 | 221 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g2002 | 337 | MobiDBLite | consensus disorder prediction | 219 | 238 | - | - | |
Lcy11g2002 | 337 | FunFam | WRKY transcription factor 22 | 145 | 215 | - | - | |
Lcy11g2002 | 337 | MobiDBLite | consensus disorder prediction | 88 | 155 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g2002 | Lcy-Chr11:43629554 | Lcy5g1807 | Lcy-Chr5:40852560 | 2.43E-31 | dispersed | |
Lcy11g2002 | Lcy-Chr11:43629554 | Lcy11g2004 | Lcy-Chr11:43664404 | 4.37E-14 | proximal | |
Lcy1g0091 | Lcy-Chr1:837792 | Lcy11g2002 | Lcy-Chr11:43629554 | 2.53E-41 | transposed | |
Lcy5g1593 | Lcy-Chr5:37537883 | Lcy11g2002 | Lcy-Chr11:43629554 | 4.12E-43 | transposed | |
Lcy11g2002 | Lcy-Chr11:43629554 | Lcy12g0061 | Lcy-Chr12:922852 | 2.11E-48 | wgd | |
Lcy11g2002 | Lcy-Chr11:43629554 | Lcy6g0850 | Lcy-Chr6:8578878 | 1.87E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19181 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g2002 | K13425 | - | csv:101217082 | 459.144 |