Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g2002 ATGAAAATGGAAGTTGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGTGTCTTCCGCCGCTTCCACCGCCGTCACCGCCGCCGTTCCCTCTTCTGACTTTTACTCTGTTCCTTCCATTTCCAATAACTCTATCCCTCTTGCTTTTGGTAGAGACCCAACGAACCACACAAACCATTTATTCTCTCTTCAAGATCCATTTCAAGGACCCAATTGTAATTCCACTGAGGAATTGCATGAGCTTTTCAAACCCTTTTTTCACAAATCTCAACAGCCCTCTCCGCCGCCGCCTCCTCCTCCGCCGTCTGCTCCGCCGCTTCTTTCTTCTCCGGCGGGTAAAATTCTGACCCATCAGAAACAGCAGCAGAACACCCATCTCCCCAAACAGCTCCATTCTTCCCCTGTTTCTGCCCCAAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTCTGTCAAGTTCCGGCGGAGTCTCTGTCTTCGGACATTTGGGCTTGGCGAAAATATGGCCAAAAACCGATCAAGGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCCAAGGGTTGCATGGCCCGAAAGCAAGTGGAGAGGAACAGATCCGACCCCGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAATTCCCTCGCCGGCTCCACCCGTCAAAAGCCCATCACGCCGACGCCCGCCGCCGCAGAACCCGGATCCGGAAAACCCGACCCGAAACAGCCCGGTTGCTCGTCGGAAGACCAAAGTACGATCACGGAGAGCAAAGAGGAAAAAGAGGAATTATTGGCCGAAGATGAAAAAGACGACGACCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAACTCGACAGTCCAATCGCCGACGACTGCTTTTCCGACCAGTTTCCGGCGAATTTCGAGCTTCCGTGGCTGTTCAACAATGCCGCCGCCGCCGCCAGCAGCATTTAA 1014 53.25 MKMEVDWDLHAVVRGYSAVSSAASTAVTAAVPSSDFYSVPSISNNSIPLAFGRDPTNHTNHLFSLQDPFQGPNCNSTEELHELFKPFFHKSQQPSPPPPPPPPSAPPLLSSPAGKILTHQKQQQNTHLPKQLHSSPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITPTPAAAEPGSGKPDPKQPGCSSEDQSTITESKEEKEELLAEDEKDDDLGVSDLIVNDDFYVGFEELDSPIADDCFSDQFPANFELPWLFNNAAAAASSI 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 43629554 43632006 + Maker00031399 Lcy11g2002 647903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g2002 337 ProSiteProfiles WRKY domain profile. 156 222 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g2002 337 SUPERFAMILY WRKY DNA-binding domain 159 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g2002 337 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 275 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Lcy11g2002 337 MobiDBLite consensus disorder prediction 115 138 - -
Lcy11g2002 337 Pfam WRKY DNA -binding domain 163 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g2002 337 Gene3D WRKY domain 145 215 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g2002 337 MobiDBLite consensus disorder prediction 216 287 - -
Lcy11g2002 337 MobiDBLite consensus disorder prediction 91 109 - -
Lcy11g2002 337 SMART WRKY_cls 161 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g2002 337 MobiDBLite consensus disorder prediction 219 238 - -
Lcy11g2002 337 FunFam WRKY transcription factor 22 145 215 - -
Lcy11g2002 337 MobiDBLite consensus disorder prediction 88 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2002 Lcy-Chr11:43629554 Lcy5g1807 Lcy-Chr5:40852560 2.43E-31 dispersed
Lcy11g2002 Lcy-Chr11:43629554 Lcy11g2004 Lcy-Chr11:43664404 4.37E-14 proximal
Lcy1g0091 Lcy-Chr1:837792 Lcy11g2002 Lcy-Chr11:43629554 2.53E-41 transposed
Lcy5g1593 Lcy-Chr5:37537883 Lcy11g2002 Lcy-Chr11:43629554 4.12E-43 transposed
Lcy11g2002 Lcy-Chr11:43629554 Lcy12g0061 Lcy-Chr12:922852 2.11E-48 wgd
Lcy11g2002 Lcy-Chr11:43629554 Lcy6g0850 Lcy-Chr6:8578878 1.87E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19181 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g2002 K13425 - csv:101217082 459.144