Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g2026 ATGGGGACTAGTGAAGAGGTAAAGGCTGTGAAGTCTGAAAAACCGTCTTCACCATCGCAGGATCAGAACAATGGGTCGAATTCAGCCAGTATTCATGTATTTCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCTAGAGTTGCAGTTCCACCATACTACAACTCTGCTGTGGCTTCAGGTCATGCTCCTCACCCTTATATGTGGGGCCCACCACAGATGATTCCTCCATATGGCACTCCTTATGCAGCAATCTATTCTCATGGAGGTGTTTATGCACATCCTGCAGTTTCTATGGGACCACACTCACATGGCCCTGGTGTTCCCTCATCACCTGCTGCTGCTGCTACTCCTTTGAGCATTGAAACACCTTCAAAGGTGTCTGGAAATAGCAGTCAAGGTTTGATGAAGAAACTGAAAGGTTTTGATGGCCTGGCAATGTCTATAGGCAATGTTAGCACTGAGAGTGCTGATGGGGGAGTTGAGCACGGACCATCAGAGAGTATGGAAACTGAAGGTTCCAGTGATGGAAGTGATGGAACTACTCCTGGGGCAAATCAAACCAAAAGGAAAAGAAGCCGTGAGGGAACACCTACCACTGGTAAGGATGCAAAAATTGAGACTCAGGCAAGTCCAGTTAGTGCTGCTGAAATGAATGAAGGCTCTAACAAGTTATTGGGCTCAACTAAAACAGCTGATGCGACTGGAAAACTTGGATCTGCGATTTCACCTGGAATGTCTACAGCATTGGAACTGAGAAATCCTTCTAGTCTAAACACCATGACAGGTCCAACTGGCGTTCCGCCTTGTTCAGTATTGCCTTCTGAAGTCTGGCTACAGAATGAAAAAGAGCTAAAACGGGAAAGGAGGAAACAGTCAAATAGAGAATCAGCTAGGAGGTCAAGGTTGAGGAAGCAGGCTGAGACTGAAGAATTAGCTCGTAAAGTTGATTCACTGACTGCGGAAAATGTCGCTATTAGATCTGAAATAAGTAGATTGTCAGAGAATTCCGAGAAACTTAAGCAGGAAAACGCTACATTGATGGAGAAGCTTAAAAACGCTCAATCAGGACGAACAGATGCATTAGACATGAATGAAAAGAGGATGCAACAACCTGTAAGCACAGAAATCAAAGGACCTGTGAATAAAAGCATTAACGAAGAGAGTAACATCTGCAAGAAAAACTCGAGTTCGGGTGCAAAGCTGCGTCAACTCTTGGACACGAATCCGAGGGCAGACGTGGTCGCTGCCAGCTAA 1257 45.58 MGTSEEVKAVKSEKPSSPSQDQNNGSNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVASGHAPHPYMWGPPQMIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHGPGVPSSPAAAATPLSIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVSTESADGGVEHGPSESMETEGSSDGSDGTTPGANQTKRKRSREGTPTTGKDAKIETQASPVSAAEMNEGSNKLLGSTKTADATGKLGSAISPGMSTALELRNPSSLNTMTGPTGVPPCSVLPSEVWLQNEKELKRERRKQSNRESARRSRLRKQAETEELARKVDSLTAENVAIRSEISRLSENSEKLKQENATLMEKLKNAQSGRTDALDMNEKRMQQPVSTEIKGPVNKSINEESNICKKNSSSGAKLRQLLDTNPRADVVAAS 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 43807791 43814079 - Maker00031477 Lcy11g2026 647927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g2026 418 MobiDBLite consensus disorder prediction 168 187 - -
Lcy11g2026 418 SUPERFAMILY Leucine zipper domain 285 342 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g2026 418 Pfam bZIP transcription factor 282 344 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g2026 418 Pfam Disordered region downstream of MFMR 133 262 - -
Lcy11g2026 418 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 284 347 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g2026 418 MobiDBLite consensus disorder prediction 368 404 - -
Lcy11g2026 418 MobiDBLite consensus disorder prediction 202 236 - -
Lcy11g2026 418 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 289 304 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g2026 418 MobiDBLite consensus disorder prediction 280 313 - -
Lcy11g2026 418 Pfam G-box binding protein MFMR 1 97 IPR012900 -
Lcy11g2026 418 Coils Coil 302 357 - -
Lcy11g2026 418 CDD bZIP_plant_GBF1 287 335 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g2026 418 SMART brlzneu 282 346 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g2026 418 PANTHER G-BOX-BINDING FACTOR 3-RELATED 14 373 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Lcy11g2026 418 MobiDBLite consensus disorder prediction 350 418 - -
Lcy11g2026 418 MobiDBLite consensus disorder prediction 1 30 - -
Lcy11g2026 418 MobiDBLite consensus disorder prediction 153 313 - -
Lcy11g2026 418 Gene3D - 285 339 - -
Lcy11g2026 418 MobiDBLite consensus disorder prediction 247 266 - -
Lcy11g2026 418 MobiDBLite consensus disorder prediction 13 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2026 Lcy-Chr11:43807791 Lcy1g0729 Lcy-Chr1:6231076 9.97E-25 dispersed
Lcy11g2026 Lcy-Chr11:43807791 Lcy6g2255 Lcy-Chr6:47216578 3.81E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19184 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g2026 K09060 - csv:101213720 689.493