Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g2044 ATGTCCAAGTTTATGGGTTCCCAGATACCAAAATCTCTAAGGTTTGGACAGCCAACTTCTGATTTCCATGACAAATATGGAGGTTACCAAAACAGCAGGCTGTCTCCAAGGTCCATATTGGAATGCATACAGAGAAGATTTTCAAGTGCTTCTGAGAGCTTTAGAAGAAGAGTGATGAACTTAGGCTTCAAGAATTCAGGTGATCAGTCAGTAAAGAAACCAAAATTTTGGAAGAAAATTCTTGATCCACAGAAGCCATTTCTTCAGCAATGGAACAAGATATTTGTGCTGTCCTCTGTCATAGCAGTAGCTGTGGACCCTCTCTTCTTTTACATCCCAGTGTTTGATAAAGAACATCGATGTCTAACCAGGGACGGACAGCTTATGATCATTGCCAGTGTTCTTCGTTCATTCATTGACTTATTTTATCTACTTCACATGATCTTTGAATTTCGAACTGGTTTTCTGCCCCCTACTTTACCAGTATTTGGAAGTGGTGAATTAATCAAAGATCCAGCAGCTATAGCAAAGAGATACATTTCCTCAAACTTCTTGATTGATATCTTATCTATTCTTCCACTGCCTCAGCTTTTGGTATTAGTAATTGTACCTGCAGCGAAAGGCCCGGTTCCATTGAAGACGAAGAACGTAGTGAAGATTGCAGTTCTTTTGCAATACATTCCGAGGCTTTTTCGAATTTATCCACTATACAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAACAGCCTGGAGTGGAGCTGCCTTCAATCTCCTTATTTATATGCAAGCCAGTCATGTAGTTGGTGCCATTTGGTATTTGTTATCAATAGAACAACAAGCCAAATGTTGGCTTGATGCATGCAAAGACAATAAGGACTGTATTGGCGACGTTTTGTACTGTGGAGATCATAGTAAAAAAATATATCCGTTTATAGAAAAGTATTGCCCACCTAAAGAGTCTGAGGATGACAAGACCTTCAACTTTGGGATGTATCTTGAAGCCCTTCAGTTTCAGTTAACCGACACGACTAGTTTTCGTCGCAAATTCTTCTATTCCTTCTGGTGGGCTCTGCGAAATGTCGGCTCTAGTGGACAAAACCTTCAAGTAAGCAATCACATGGGGGAGGTTTTTTTTGCTGTCTTCATTGCCATCCTTGGTTTGGTTTTGTTTGCCTTTCTCATAAGCAATATTCAGAAATATTTGCAGTCAGCAACTGTTAAAATAGAGCAGATGAGAATTAACCGAAGAGACGCCGAGCATTGGATGGCACATCGTATGCTTCCGGAGGACTTGAGGCAGCGTATTAGACGATACGATCAATACAAATGGCAGCTAAACAGGGGAGTTAAGGAAGAGGAACTCATTAGTAACCTTCCTAAAGACCTTAGGAGAGACATCAAACGCCATCTTTGCTTGGCCCTTCTCAAGAAAGTGCCACTTTTTAGCAGCATGAATAAGCAACTGCTAGACTCAGTGTGCGAATATCTCAAGCCTGTGTTATTCACAGAGAAGAGCTTCATTCTGCAAGAGGGTGACCAAATTGATGTGATGCTATTTATCATGAAAGGAAATCTAGCTGCCATTACTACTAATGGTTGGAAAAACGACCCTTGGTCGGTCACTCTTAAGGCTGGCGACTTCTGCGGTGAAGAGCTAGTACAATGGGCAATGGATCCCACCTCTACTTCTCTTCCCATTTCAACCAGAAAAGTTAAATCTCTAACTGAAGTTGAAGCCTTTGCTCTAAAGGCTAATGAGCTGAAATCTGTAACTAGTCAGTTCCACTTCCAGCGCCTCAATAGCAAGCAATTCCAACTCTCAGTGAGGCATGTTCTTACTGAACTTATGAACTTGATATATACATTGTTCTACTCTCATCAATGGAAAGTTTGGGCAGCCTATAAGATACAAGAAGCTTGGCATGATTACCGTGAAAGAAAGAAGAGAGGGGGTGGAAATGGCAGGTTTCAAGATGCATTGGCTGAAACAGTTGGCGCCTCGGCGAGCTTCGGCGCCACTCTTTATGCATCCATATTCATATCCCATCTACTGCAAGCCGTGCAGCGAGATCAACACCATCAAACTACCCAACTCACTCGAGTGATGACGCTACCGCCGCCTCCAAAGCCAGACGACGAGCAAGACAGGCCAAACTTCACCATCTTGAATCTTTAG 2181 42.27 MSKFMGSQIPKSLRFGQPTSDFHDKYGGYQNSRLSPRSILECIQRRFSSASESFRRRVMNLGFKNSGDQSVKKPKFWKKILDPQKPFLQQWNKIFVLSSVIAVAVDPLFFYIPVFDKEHRCLTRDGQLMIIASVLRSFIDLFYLLHMIFEFRTGFLPPTLPVFGSGELIKDPAAIAKRYISSNFLIDILSILPLPQLLVLVIVPAAKGPVPLKTKNVVKIAVLLQYIPRLFRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYLLSIEQQAKCWLDACKDNKDCIGDVLYCGDHSKKIYPFIEKYCPPKESEDDKTFNFGMYLEALQFQLTDTTSFRRKFFYSFWWALRNVGSSGQNLQVSNHMGEVFFAVFIAILGLVLFAFLISNIQKYLQSATVKIEQMRINRRDAEHWMAHRMLPEDLRQRIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKRHLCLALLKKVPLFSSMNKQLLDSVCEYLKPVLFTEKSFILQEGDQIDVMLFIMKGNLAAITTNGWKNDPWSVTLKAGDFCGEELVQWAMDPTSTSLPISTRKVKSLTEVEAFALKANELKSVTSQFHFQRLNSKQFQLSVRHVLTELMNLIYTLFYSHQWKVWAAYKIQEAWHDYRERKKRGGGNGRFQDALAETVGASASFGATLYASIFISHLLQAVQRDQHHQTTQLTRVMTLPPPPKPDDEQDRPNFTILNL 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44087349 44091307 + Maker00031497 Lcy11g2044 647945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g2044 726 Pfam Ion transport protein 95 407 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g2044 726 SUPERFAMILY cAMP-binding domain-like 412 597 IPR018490 -
Lcy11g2044 726 Gene3D - 93 406 - -
Lcy11g2044 726 SUPERFAMILY Voltage-gated potassium channels 82 404 - -
Lcy11g2044 726 CDD CAP_ED 482 611 IPR000595 -
Lcy11g2044 726 ProSiteProfiles cAMP/cGMP binding motif profile. 482 566 IPR000595 -
Lcy11g2044 726 Gene3D Jelly Rolls 480 597 IPR014710 -
Lcy11g2044 726 Gene3D Helix hairpin bin 408 473 - -
Lcy11g2044 726 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 68 687 - -
Lcy11g2044 726 SMART cnmp_10 482 605 IPR000595 -
Lcy11g2044 726 MobiDBLite consensus disorder prediction 703 726 - -
Lcy11g2044 726 FunFam Cyclic nucleotide-gated ion channel 1 409 473 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2044 Lcy-Chr11:44087349 Lcy12g0123 Lcy-Chr12:1551768 3.91E-239 dispersed
Lcy11g2043 Lcy-Chr11:44079285 Lcy11g2044 Lcy-Chr11:44087349 6.43E-294 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g2044 K05391 - csv:101206492 1085.86