Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g2055 ATGAAGATTGAAGATGGGTTGCGGAGTGTGGGTGGGAAGGATGAGGACAAGACTGTGGTTGCTGCTGTTTTGGGGACTCGGGCTTTTAATTACTTGATGTCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCTGTGAGGAATGATGAGAATTTGCAGAACAAGCTCTCGGATCTGGTGGAGAGACCTAACGCTTCTAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCGAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGAGATCCTAGGGATGGAGAGGAAACAGAAGCTACACAGATTCTTAGCCTTCGGCTTGAAGACGAGAGCCAACAGAGGATGAAGAAAAGAGCACTGCAGAAGCTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGGTTGGACAGAGTTACTGATACTGAAATGTTTTTTCTTGCTTCCATGTATTTCTCCTTCCCTCGTGGAGAGGGGGGCCCTGGGAAGTGCTTGGCTTCTGGGAAACATGTCTGGCATTTGGATGTGCTCAATTTGCCTGCTGAGTATTGTGTGAGATCGTATCTGGTGAAATCTGCAGGAATTCGGACGGTTGTTTTGGTGCCGACTGATGTTGGAGTGGTTGAATTGGGTTCTGTGAGATCTGTGAGTGAGAGCTTAGAGTTAGTGCAGTTGATTAGATCATTGTTTTCATCTCAACATTCACTTGATAGGGTGAGGACGTCAGCTGCGATGCCGATTATGGCTGAAAGAAAGGATGAAAACACACCCTTTGCGAGTTTGGGGATTGCAGAAAGAGGAGAAGGAGGAGGGGGGATTCCTAAGGTTTTTGGGCAGACTTTGAATTCGGGGAACATGGGTCGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGAGAGATCATGGGAAGCATGTGCCAATGGAGGTAGAATTCAATTTCAAAGCCCCCGAAATGGCATTCGCAGTCCGAGTTTGGCACATGTTCAAGCTCTCAAACAGGGAAATCCTACAGAAATTTATGGCTCTCCAACTCCACCAGCAAATAACAATCACGAGCAACTTGTCAATGGAGTCAGAGATGAATTTTGTCTCAATCCCTATCAATCACAGAAGCTGGTCCAAATGCAAATTGATTTTTCTGTGGCAACATCAAGGCCTGCTGTGATTAACCGTGTAGGTGCGGATTCAGAGCATTCAGATGTAGAACCTCAATGCAAAGAAGAGGGGCCTTGCACTGATGAAAGACGACCACGTAAACGAGGCAGAAAGCCTGCAAATGGCAGGGAGGAACCACTAAATCACGTGGAGGCGGAGAGGCAGCGCCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCAAATATCTCCAAGATGGACAAAGCTTCCTTGCTGGGAGATGCCATTGCTTACATCAATGAGCTTCAAGCAAAAGTGAAGGCCATGGAATTTGAACGGGAGAAATCTGGTGTCACCTCAAGTGAAGCAACCCCTTCAGAGGTGAACCCCGAAATTGAAAACAAAGATCAATTCCTTGATGTCGACGTCGACGTCGAAGCGGCTAATGATGAAGTCATCGTGAAGGTTAGCTGCCCATTAGAGACACACCCTGCCTCAAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCAAAACTTTCTGAAGCAAACGATACAGTTTTGCACACATTTGTCATCAAGTCTCCCGGATCGGAGCAGTTGACGAAGGAACAGTTGATAGCCGCATTTTCCCAGGATTCCACTCCGTTACATCCTCTATCAACAGTTGGGTAG 1854 46.22 MKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMSCSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETEATQILSLRLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCLASGKHVWHLDVLNLPAEYCVRSYLVKSAGIRTVVLVPTDVGVVELGSVRSVSESLELVQLIRSLFSSQHSLDRVRTSAAMPIMAERKDENTPFASLGIAERGEGGGGIPKVFGQTLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIRSPSLAHVQALKQGNPTEIYGSPTPPANNNHEQLVNGVRDEFCLNPYQSQKLVQMQIDFSVATSRPAVINRVGADSEHSDVEPQCKEEGPCTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKVKAMEFEREKSGVTSSEATPSEVNPEIENKDQFLDVDVDVEAANDEVIVKVSCPLETHPASRVIKAMKDAQINVVDSKLSEANDTVLHTFVIKSPGSEQLTKEQLIAAFSQDSTPLHPLSTVG 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44159398 44161251 - Maker00031837 Lcy11g2055 647956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g2055 617 PANTHER MYC 41 606 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Lcy11g2055 617 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 442 491 IPR011598 GO:0046983(InterPro)
Lcy11g2055 617 MobiDBLite consensus disorder prediction 408 453 - -
Lcy11g2055 617 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Lcy11g2055 617 Gene3D - 435 505 IPR036638 GO:0046983(InterPro)
Lcy11g2055 617 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 445 504 IPR036638 GO:0046983(InterPro)
Lcy11g2055 617 SMART finulus 448 497 IPR011598 GO:0046983(InterPro)
Lcy11g2055 617 MobiDBLite consensus disorder prediction 406 453 - -
Lcy11g2055 617 CDD bHLH_AtAIB_like 439 512 - -
Lcy11g2055 617 FunFam Transcription factor bHLH13 435 508 - -
Lcy11g2055 617 Pfam Helix-loop-helix DNA-binding domain 446 492 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2055 Lcy-Chr11:44159398 Lcy12g2140 Lcy-Chr12:42672920 5.51E-84 dispersed
Lcy11g2055 Lcy-Chr11:44159398 Lcy4g0851 Lcy-Chr4:11756511 3.71E-124 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19188 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g2055 - - - 0.0