Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g2055 | ATGAAGATTGAAGATGGGTTGCGGAGTGTGGGTGGGAAGGATGAGGACAAGACTGTGGTTGCTGCTGTTTTGGGGACTCGGGCTTTTAATTACTTGATGTCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCTGTGAGGAATGATGAGAATTTGCAGAACAAGCTCTCGGATCTGGTGGAGAGACCTAACGCTTCTAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCGAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGAGATCCTAGGGATGGAGAGGAAACAGAAGCTACACAGATTCTTAGCCTTCGGCTTGAAGACGAGAGCCAACAGAGGATGAAGAAAAGAGCACTGCAGAAGCTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGGTTGGACAGAGTTACTGATACTGAAATGTTTTTTCTTGCTTCCATGTATTTCTCCTTCCCTCGTGGAGAGGGGGGCCCTGGGAAGTGCTTGGCTTCTGGGAAACATGTCTGGCATTTGGATGTGCTCAATTTGCCTGCTGAGTATTGTGTGAGATCGTATCTGGTGAAATCTGCAGGAATTCGGACGGTTGTTTTGGTGCCGACTGATGTTGGAGTGGTTGAATTGGGTTCTGTGAGATCTGTGAGTGAGAGCTTAGAGTTAGTGCAGTTGATTAGATCATTGTTTTCATCTCAACATTCACTTGATAGGGTGAGGACGTCAGCTGCGATGCCGATTATGGCTGAAAGAAAGGATGAAAACACACCCTTTGCGAGTTTGGGGATTGCAGAAAGAGGAGAAGGAGGAGGGGGGATTCCTAAGGTTTTTGGGCAGACTTTGAATTCGGGGAACATGGGTCGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGAGAGATCATGGGAAGCATGTGCCAATGGAGGTAGAATTCAATTTCAAAGCCCCCGAAATGGCATTCGCAGTCCGAGTTTGGCACATGTTCAAGCTCTCAAACAGGGAAATCCTACAGAAATTTATGGCTCTCCAACTCCACCAGCAAATAACAATCACGAGCAACTTGTCAATGGAGTCAGAGATGAATTTTGTCTCAATCCCTATCAATCACAGAAGCTGGTCCAAATGCAAATTGATTTTTCTGTGGCAACATCAAGGCCTGCTGTGATTAACCGTGTAGGTGCGGATTCAGAGCATTCAGATGTAGAACCTCAATGCAAAGAAGAGGGGCCTTGCACTGATGAAAGACGACCACGTAAACGAGGCAGAAAGCCTGCAAATGGCAGGGAGGAACCACTAAATCACGTGGAGGCGGAGAGGCAGCGCCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCAAATATCTCCAAGATGGACAAAGCTTCCTTGCTGGGAGATGCCATTGCTTACATCAATGAGCTTCAAGCAAAAGTGAAGGCCATGGAATTTGAACGGGAGAAATCTGGTGTCACCTCAAGTGAAGCAACCCCTTCAGAGGTGAACCCCGAAATTGAAAACAAAGATCAATTCCTTGATGTCGACGTCGACGTCGAAGCGGCTAATGATGAAGTCATCGTGAAGGTTAGCTGCCCATTAGAGACACACCCTGCCTCAAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCAAAACTTTCTGAAGCAAACGATACAGTTTTGCACACATTTGTCATCAAGTCTCCCGGATCGGAGCAGTTGACGAAGGAACAGTTGATAGCCGCATTTTCCCAGGATTCCACTCCGTTACATCCTCTATCAACAGTTGGGTAG | 1854 | 46.22 | MKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMSCSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETEATQILSLRLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCLASGKHVWHLDVLNLPAEYCVRSYLVKSAGIRTVVLVPTDVGVVELGSVRSVSESLELVQLIRSLFSSQHSLDRVRTSAAMPIMAERKDENTPFASLGIAERGEGGGGIPKVFGQTLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIRSPSLAHVQALKQGNPTEIYGSPTPPANNNHEQLVNGVRDEFCLNPYQSQKLVQMQIDFSVATSRPAVINRVGADSEHSDVEPQCKEEGPCTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKVKAMEFEREKSGVTSSEATPSEVNPEIENKDQFLDVDVDVEAANDEVIVKVSCPLETHPASRVIKAMKDAQINVVDSKLSEANDTVLHTFVIKSPGSEQLTKEQLIAAFSQDSTPLHPLSTVG | 617 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 44159398 | 44161251 | - | Maker00031837 | Lcy11g2055 | 647956 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g2055 | 617 | PANTHER | MYC | 41 | 606 | IPR045084 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER) | |
Lcy11g2055 | 617 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 442 | 491 | IPR011598 | GO:0046983(InterPro) | |
Lcy11g2055 | 617 | MobiDBLite | consensus disorder prediction | 408 | 453 | - | - | |
Lcy11g2055 | 617 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 52 | 240 | IPR025610 | - | |
Lcy11g2055 | 617 | Gene3D | - | 435 | 505 | IPR036638 | GO:0046983(InterPro) | |
Lcy11g2055 | 617 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 445 | 504 | IPR036638 | GO:0046983(InterPro) | |
Lcy11g2055 | 617 | SMART | finulus | 448 | 497 | IPR011598 | GO:0046983(InterPro) | |
Lcy11g2055 | 617 | MobiDBLite | consensus disorder prediction | 406 | 453 | - | - | |
Lcy11g2055 | 617 | CDD | bHLH_AtAIB_like | 439 | 512 | - | - | |
Lcy11g2055 | 617 | FunFam | Transcription factor bHLH13 | 435 | 508 | - | - | |
Lcy11g2055 | 617 | Pfam | Helix-loop-helix DNA-binding domain | 446 | 492 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g2055 | Lcy-Chr11:44159398 | Lcy12g2140 | Lcy-Chr12:42672920 | 5.51E-84 | dispersed | |
Lcy11g2055 | Lcy-Chr11:44159398 | Lcy4g0851 | Lcy-Chr4:11756511 | 3.71E-124 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19188 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g2055 | - | - | - | 0.0 |