Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g2086 ATGAACGTGAAAACTCCGGCGACGAGGACTCGTGTCGGGAAGTACGAGCTCGGTAAAACGCTTGGCGAGGGCAGTTTTGCTAAGGTCAAGTTCGCGAAGAACGTTGAGAATGGTGATTATGTCGCCATCAAGATTCTTGATCGCGGACAAGTTCTTCGACACAAGATGGTCGAACAGATTAAAAGAGAGATATCGACTCTGAAATTGATCAAGCATCCGAATGTTGTTAAGATTTATGAGGTTATGGCAAGCAAATCAAAAATCTACATTGTTCTTGAGTTTGTGGATGGAGGCGAGCTCTTTGACAAAATAGCTGCAAAGGGAAGGCTTAAAGAGGATGAGGCAAGGAAATATTTCCATCAGCTTATTAATGCTGTAGATTACTGCCATAGTAGAGGCGTGTACCATCGAGATTTGAAGCCTGAAAATCTTCTTCTGGACAAACATGATGTTCTTAAAGTATCTGATTTTGGATTGAGTGCATTTTCGCAGCAAGTTCAAGGGGACGGTCTTCTTCACACTGCCTGTGGGACTCCGAACTACGTGGCCCCCGAGGTCTTCCATGATAAAGGTTATGATGGTACATCATCCGATATTTGGTCATGTGGGGTCATTCTCTTCGTTCTTATGGCTGGCTTCTTGCCTTTTGATGAAGAAAATCTAATGTGTTTGTATAGAAAAATTTCCAAGGCTGATTTCTGCTTTCCTTCATGGTTCTCAAATGGTGCTAGAAAATTAATTCGTCGCATTCTTGATCCAAACCCTCTTACTCGAATTACGATAGCTCAAATTCAAGAAGATGAATGGTTCAAGAAGGGCTACACGGCTGCTCATTTTGAAGTGGAAGAGGATATAACTCTCGACGATGTCGATGCCGCTTTTAGCAGCTCAAGGGAACATCTTGTAACCGAAAGAAAAGAGAAGCCAGTGTCCATGAATGCATTTGAGCTCATCTCTAGGTCACCAGGCTTCAGTCTTGATAATCTATTTGAGAAGCAGAAGGCTGTTGTGAAGAGCGAGACTCGTTTTACGTCGCAAAGCCCTGCGAACGAGATCATGTTGAAGATTGAAGAAACTGCAAAACCTATGGGATTCAACGTTAGAACACGGGACTACAAGATGAAGTTGAAAGGTGATAAGACTGGTAGGAAAGGACATCTCTCCATAGCTACTGAGGTGTTTGAGGTGGCTCCTTCCTTGCATATGGTGGAGCTTCGAAAAACTGGTGGCGATACGCTTGAGTTTCACAAGGCATGGCAATCAGTATTCTTATTTGAAATTTGA 1284 43.07 MNVKTPATRTRVGKYELGKTLGEGSFAKVKFAKNVENGDYVAIKILDRGQVLRHKMVEQIKREISTLKLIKHPNVVKIYEVMASKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARKYFHQLINAVDYCHSRGVYHRDLKPENLLLDKHDVLKVSDFGLSAFSQQVQGDGLLHTACGTPNYVAPEVFHDKGYDGTSSDIWSCGVILFVLMAGFLPFDEENLMCLYRKISKADFCFPSWFSNGARKLIRRILDPNPLTRITIAQIQEDEWFKKGYTAAHFEVEEDITLDDVDAAFSSSREHLVTERKEKPVSMNAFELISRSPGFSLDNLFEKQKAVVKSETRFTSQSPANEIMLKIEETAKPMGFNVRTRDYKMKLKGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKAWQSVFLFEI 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44391794 44396079 + Maker00031943 Lcy11g2086 647987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g2086 427 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g2086 427 SMART serkin_6 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g2086 427 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Lcy11g2086 427 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Lcy11g2086 427 FunFam Non-specific serine/threonine protein kinase 306 424 - -
Lcy11g2086 427 CDD STKc_SnRK3 14 269 - -
Lcy11g2086 427 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 416 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy11g2086 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g2086 427 Gene3D Kinase associated domain 1, KA1 306 426 - -
Lcy11g2086 427 SUPERFAMILY Protein kinase-like (PK-like) 12 302 IPR011009 -
Lcy11g2086 427 FunFam Non-specific serine/threonine protein kinase 8 310 - -
Lcy11g2086 427 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Lcy11g2086 427 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g2086 427 CDD CIPK_C 313 419 - -
Lcy11g2086 427 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165(InterPro)
Lcy11g2086 427 Pfam NAF domain 309 368 IPR004041 GO:0007165(InterPro)
Lcy11g2086 427 Gene3D Transferase(Phosphotransferase) domain 1 95 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2086 Lcy-Chr11:44391794 Lcy1g0158 Lcy-Chr1:1470580 3.19E-206 dispersed
Lcy11g2086 Lcy-Chr11:44391794 Lcy5g1703 Lcy-Chr5:39519352 5.09E-217 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65482 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g2086 - - - 0.0