Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g2086 | ATGAACGTGAAAACTCCGGCGACGAGGACTCGTGTCGGGAAGTACGAGCTCGGTAAAACGCTTGGCGAGGGCAGTTTTGCTAAGGTCAAGTTCGCGAAGAACGTTGAGAATGGTGATTATGTCGCCATCAAGATTCTTGATCGCGGACAAGTTCTTCGACACAAGATGGTCGAACAGATTAAAAGAGAGATATCGACTCTGAAATTGATCAAGCATCCGAATGTTGTTAAGATTTATGAGGTTATGGCAAGCAAATCAAAAATCTACATTGTTCTTGAGTTTGTGGATGGAGGCGAGCTCTTTGACAAAATAGCTGCAAAGGGAAGGCTTAAAGAGGATGAGGCAAGGAAATATTTCCATCAGCTTATTAATGCTGTAGATTACTGCCATAGTAGAGGCGTGTACCATCGAGATTTGAAGCCTGAAAATCTTCTTCTGGACAAACATGATGTTCTTAAAGTATCTGATTTTGGATTGAGTGCATTTTCGCAGCAAGTTCAAGGGGACGGTCTTCTTCACACTGCCTGTGGGACTCCGAACTACGTGGCCCCCGAGGTCTTCCATGATAAAGGTTATGATGGTACATCATCCGATATTTGGTCATGTGGGGTCATTCTCTTCGTTCTTATGGCTGGCTTCTTGCCTTTTGATGAAGAAAATCTAATGTGTTTGTATAGAAAAATTTCCAAGGCTGATTTCTGCTTTCCTTCATGGTTCTCAAATGGTGCTAGAAAATTAATTCGTCGCATTCTTGATCCAAACCCTCTTACTCGAATTACGATAGCTCAAATTCAAGAAGATGAATGGTTCAAGAAGGGCTACACGGCTGCTCATTTTGAAGTGGAAGAGGATATAACTCTCGACGATGTCGATGCCGCTTTTAGCAGCTCAAGGGAACATCTTGTAACCGAAAGAAAAGAGAAGCCAGTGTCCATGAATGCATTTGAGCTCATCTCTAGGTCACCAGGCTTCAGTCTTGATAATCTATTTGAGAAGCAGAAGGCTGTTGTGAAGAGCGAGACTCGTTTTACGTCGCAAAGCCCTGCGAACGAGATCATGTTGAAGATTGAAGAAACTGCAAAACCTATGGGATTCAACGTTAGAACACGGGACTACAAGATGAAGTTGAAAGGTGATAAGACTGGTAGGAAAGGACATCTCTCCATAGCTACTGAGGTGTTTGAGGTGGCTCCTTCCTTGCATATGGTGGAGCTTCGAAAAACTGGTGGCGATACGCTTGAGTTTCACAAGGCATGGCAATCAGTATTCTTATTTGAAATTTGA | 1284 | 43.07 | MNVKTPATRTRVGKYELGKTLGEGSFAKVKFAKNVENGDYVAIKILDRGQVLRHKMVEQIKREISTLKLIKHPNVVKIYEVMASKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARKYFHQLINAVDYCHSRGVYHRDLKPENLLLDKHDVLKVSDFGLSAFSQQVQGDGLLHTACGTPNYVAPEVFHDKGYDGTSSDIWSCGVILFVLMAGFLPFDEENLMCLYRKISKADFCFPSWFSNGARKLIRRILDPNPLTRITIAQIQEDEWFKKGYTAAHFEVEEDITLDDVDAAFSSSREHLVTERKEKPVSMNAFELISRSPGFSLDNLFEKQKAVVKSETRFTSQSPANEIMLKIEETAKPMGFNVRTRDYKMKLKGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKAWQSVFLFEI | 427 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 44391794 | 44396079 | + | Maker00031943 | Lcy11g2086 | 647987 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g2086 | 427 | ProSiteProfiles | Protein kinase domain profile. | 15 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g2086 | 427 | SMART | serkin_6 | 15 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g2086 | 427 | FunFam | Non-specific serine/threonine protein kinase | 6 | 94 | - | - | |
Lcy11g2086 | 427 | Gene3D | Phosphorylase Kinase; domain 1 | 4 | 94 | - | - | |
Lcy11g2086 | 427 | FunFam | Non-specific serine/threonine protein kinase | 306 | 424 | - | - | |
Lcy11g2086 | 427 | CDD | STKc_SnRK3 | 14 | 269 | - | - | |
Lcy11g2086 | 427 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 9 | 416 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Lcy11g2086 | 427 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 134 | 146 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy11g2086 | 427 | Gene3D | Kinase associated domain 1, KA1 | 306 | 426 | - | - | |
Lcy11g2086 | 427 | SUPERFAMILY | Protein kinase-like (PK-like) | 12 | 302 | IPR011009 | - | |
Lcy11g2086 | 427 | FunFam | Non-specific serine/threonine protein kinase | 8 | 310 | - | - | |
Lcy11g2086 | 427 | ProSitePatterns | Protein kinases ATP-binding region signature. | 21 | 44 | IPR017441 | GO:0005524(InterPro) | |
Lcy11g2086 | 427 | Pfam | Protein kinase domain | 15 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g2086 | 427 | CDD | CIPK_C | 313 | 419 | - | - | |
Lcy11g2086 | 427 | ProSiteProfiles | NAF domain profile. | 307 | 331 | IPR018451 | GO:0007165(InterPro) | |
Lcy11g2086 | 427 | Pfam | NAF domain | 309 | 368 | IPR004041 | GO:0007165(InterPro) | |
Lcy11g2086 | 427 | Gene3D | Transferase(Phosphotransferase) domain 1 | 95 | 277 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g2086 | Lcy-Chr11:44391794 | Lcy1g0158 | Lcy-Chr1:1470580 | 3.19E-206 | dispersed | |
Lcy11g2086 | Lcy-Chr11:44391794 | Lcy5g1703 | Lcy-Chr5:39519352 | 5.09E-217 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65482 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g2086 | - | - | - | 0.0 |