Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g2096 ATGTTTCGAGCTTTTGTGTTAGATCTCATTTACTCGATTGAGTTTCTGAACCGTCTCGTTTTGTTTCGTTTAGATCGGAACGCCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTCAATCGACTGCCGACGGCGGTGGATGGCGAGGAAGAGAACGGCGTTTCGTCTCCGAACAGTACGATTTCCAGCATCAGTGGGAAGAGGAGCGAGAGAGAAGCGGTCGGAGACGAGGCGGAGGCGGAGGCTGAAGCGGAGGCCGAGAGAGCATCGTGCTCGCGAGGTAGCGACGACGAAGACGGCGGCGGAGGCGACGGCGACGCCTCGAGAAAGAAGCTTAGACTATCGAAGGAACAGTCGATGGTTCTTGAGGAGACCTTCAAAGAGCACAATACGCTCAATCCAGTAAGTGGCGATTTGGTCATTTCGTACGATTCTTCTCTGCCCGTGGGAAGGGATCGATTCCCTTCACGTAGCAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAGTTGAAGCAGACAGAAGTGGACTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTAACAGAGGAAAACAGAAGGCTACAGAAGGAGGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCCACCACTCTCACCATGTGCCCTCAGTGTGAGCGTGTTGCCGTTTCCTCGTCATCTTCGACCTCAGCCGCTCCGACCCGCCATCCAGCAGCGGCTGGTCTGCAGCGTCCCTCGATGGCCATCAACCCATGGGCGGTGTTGCCGATCCAACGTTGA 858 53.73 MFRAFVLDLIYSIEFLNRLVLFRLDRNADSRSFLRGIDVNRLPTAVDGEEENGVSSPNSTISSISGKRSEREAVGDEAEAEAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPVSGDLVISYDSSLPVGRDRFPSRSKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTSAAPTRHPAAAGLQRPSMAINPWAVLPIQR 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44455520 44457439 - Maker00031879 Lcy11g2096 647997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g2096 285 MobiDBLite consensus disorder prediction 47 110 - -
Lcy11g2096 285 MobiDBLite consensus disorder prediction 51 67 - -
Lcy11g2096 285 Pfam Homeobox associated leucine zipper 189 223 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g2096 285 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy11g2096 285 SMART HOX_1 107 193 IPR001356 GO:0003677(InterPro)
Lcy11g2096 285 Coils Coil 195 225 - -
Lcy11g2096 285 ProSiteProfiles 'Homeobox' domain profile. 105 189 IPR001356 GO:0003677(InterPro)
Lcy11g2096 285 CDD homeodomain 109 190 IPR001356 GO:0003677(InterPro)
Lcy11g2096 285 Gene3D - 113 187 - -
Lcy11g2096 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 39 260 IPR050762 -
Lcy11g2096 285 Pfam Homeodomain 159 187 IPR001356 GO:0003677(InterPro)
Lcy11g2096 285 SUPERFAMILY Homeodomain-like 159 198 IPR009057 -
Lcy11g2096 285 MobiDBLite consensus disorder prediction 84 110 - -
Lcy11g2096 285 SMART halz 189 232 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g2096 285 Pfam HD-ZIP protein N terminus 25 72 IPR006712 GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2096 Lcy-Chr11:44455520 Lcy6g2126 Lcy-Chr6:45004693 2.99E-80 dispersed
Lcy11g2096 Lcy-Chr11:44455520 Lcy3g1945 Lcy-Chr3:46602999 1.07E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19191 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g2096 K09338 - csv:101222132 375.941