Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g2103 | ATGGAACCATTTTTCAATTACATTGAAGCATCTGATTCTAAAGAAAGCACTTTTTGCAACTCTTCCTCTATCACAAGCCATGGAGATGAAGAGATTTCAGACAAGAGAAAACAGAGGAGCTCTGAAGAAGATAAGAACCACCATATGTTCAGAGGAGTTCGGAAACGAAATTGGGGCAAATGGGTTTCTGAGATTCGTGAGCCAAGGAAGAAGACGAGGATTTGGCTTGGAACTTACCCAACGGCGGAAATGGCAGCCCGAGCCCACGACGCGGCGGCGCTGGCCATAAAGGGTCACTCTGCTTTTCTCAATTTCCCTGAATTGGCCCAGTTCCTTCCTCGGCCGCTCTCCAAGTCCCACAAGGACATCCAGGCCGCTGCGGCGCAGGCGGCGGCCGCCACATTTTCCGCCGGAAACAACCGTGGAGACGTAGGAGGGGAAGCGGCGGAGAACAGGGAGCCTCTGTTTTTGGGTAGCGACGGAGGAGAGAGAACAGAGGATTCGACGAACTCCCCGTCGACGGCCGCCGGTGATGAGACATTGTTCGATTTGCCTGATCTGTTCGTGGGGAGTTCTGATTTGAAAGATGGGTTTGTTTATCATTCTTCGTTTTGGCAGTTTTGTGCGGCGGCCGATCATACTGGTTTCCGGCTGGAAGAGCCTTCGTTTTGGGAACTCATTTAA | 684 | 51.61 | MEPFFNYIEASDSKESTFCNSSSITSHGDEEISDKRKQRSSEEDKNHHMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTAEMAARAHDAAALAIKGHSAFLNFPELAQFLPRPLSKSHKDIQAAAAQAAAATFSAGNNRGDVGGEAAENREPLFLGSDGGERTEDSTNSPSTAAGDETLFDLPDLFVGSSDLKDGFVYHSSFWQFCAAADHTGFRLEEPSFWELI | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 44497811 | 44498494 | + | Maker00031409 | Lcy11g2103 | 648004 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g2103 | 227 | ProSiteProfiles | AP2/ERF domain profile. | 49 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g2103 | 227 | Pfam | AP2 domain | 50 | 99 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g2103 | 227 | PRINTS | Ethylene responsive element binding protein signature | 72 | 88 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g2103 | 227 | PRINTS | Ethylene responsive element binding protein signature | 50 | 61 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g2103 | 227 | CDD | AP2 | 50 | 108 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g2103 | 227 | MobiDBLite | consensus disorder prediction | 10 | 49 | - | - | |
Lcy11g2103 | 227 | Gene3D | AP2/ERF domain | 49 | 107 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy11g2103 | 227 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 34 | 199 | IPR051032 | - | |
Lcy11g2103 | 227 | MobiDBLite | consensus disorder prediction | 139 | 178 | - | - | |
Lcy11g2103 | 227 | MobiDBLite | consensus disorder prediction | 10 | 27 | - | - | |
Lcy11g2103 | 227 | MobiDBLite | consensus disorder prediction | 28 | 49 | - | - | |
Lcy11g2103 | 227 | SUPERFAMILY | DNA-binding domain | 49 | 107 | IPR016177 | GO:0003677(InterPro) | |
Lcy11g2103 | 227 | MobiDBLite | consensus disorder prediction | 163 | 177 | - | - | |
Lcy11g2103 | 227 | FunFam | Ethylene-responsive transcription factor 2 | 48 | 107 | - | - | |
Lcy11g2103 | 227 | SMART | rav1_2 | 49 | 112 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g2103 | Lcy-Chr11:44497811 | Lcy3g2138 | Lcy-Chr3:48321275 | 9.88E-39 | dispersed | |
Lcy11g2103 | Lcy-Chr11:44497811 | Lcy4g0942 | Lcy-Chr4:15461480 | 7.40E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19192 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g2103 | - | - | - | 0.0 |