Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g2103 ATGGAACCATTTTTCAATTACATTGAAGCATCTGATTCTAAAGAAAGCACTTTTTGCAACTCTTCCTCTATCACAAGCCATGGAGATGAAGAGATTTCAGACAAGAGAAAACAGAGGAGCTCTGAAGAAGATAAGAACCACCATATGTTCAGAGGAGTTCGGAAACGAAATTGGGGCAAATGGGTTTCTGAGATTCGTGAGCCAAGGAAGAAGACGAGGATTTGGCTTGGAACTTACCCAACGGCGGAAATGGCAGCCCGAGCCCACGACGCGGCGGCGCTGGCCATAAAGGGTCACTCTGCTTTTCTCAATTTCCCTGAATTGGCCCAGTTCCTTCCTCGGCCGCTCTCCAAGTCCCACAAGGACATCCAGGCCGCTGCGGCGCAGGCGGCGGCCGCCACATTTTCCGCCGGAAACAACCGTGGAGACGTAGGAGGGGAAGCGGCGGAGAACAGGGAGCCTCTGTTTTTGGGTAGCGACGGAGGAGAGAGAACAGAGGATTCGACGAACTCCCCGTCGACGGCCGCCGGTGATGAGACATTGTTCGATTTGCCTGATCTGTTCGTGGGGAGTTCTGATTTGAAAGATGGGTTTGTTTATCATTCTTCGTTTTGGCAGTTTTGTGCGGCGGCCGATCATACTGGTTTCCGGCTGGAAGAGCCTTCGTTTTGGGAACTCATTTAA 684 51.61 MEPFFNYIEASDSKESTFCNSSSITSHGDEEISDKRKQRSSEEDKNHHMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTAEMAARAHDAAALAIKGHSAFLNFPELAQFLPRPLSKSHKDIQAAAAQAAAATFSAGNNRGDVGGEAAENREPLFLGSDGGERTEDSTNSPSTAAGDETLFDLPDLFVGSSDLKDGFVYHSSFWQFCAAADHTGFRLEEPSFWELI 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44497811 44498494 + Maker00031409 Lcy11g2103 648004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g2103 227 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g2103 227 Pfam AP2 domain 50 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g2103 227 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g2103 227 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g2103 227 CDD AP2 50 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g2103 227 MobiDBLite consensus disorder prediction 10 49 - -
Lcy11g2103 227 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g2103 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 34 199 IPR051032 -
Lcy11g2103 227 MobiDBLite consensus disorder prediction 139 178 - -
Lcy11g2103 227 MobiDBLite consensus disorder prediction 10 27 - -
Lcy11g2103 227 MobiDBLite consensus disorder prediction 28 49 - -
Lcy11g2103 227 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677(InterPro)
Lcy11g2103 227 MobiDBLite consensus disorder prediction 163 177 - -
Lcy11g2103 227 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Lcy11g2103 227 SMART rav1_2 49 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2103 Lcy-Chr11:44497811 Lcy3g2138 Lcy-Chr3:48321275 9.88E-39 dispersed
Lcy11g2103 Lcy-Chr11:44497811 Lcy4g0942 Lcy-Chr4:15461480 7.40E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19192 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g2103 - - - 0.0