Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g2114 ATGGGACATTTCCACCATTATTCCCTTTTCATCTTTGCTGCCATTCTTTCTCTTTCACTTACTACTCCTTGCTTTTGCTTCCATCCCAAATCCTTCAATGTCTCTAAGTATCAGTCCTATGATTCCGATTGGTCCCCGGCCGTCGCCACCTGGTACGGCAGCCCTGACGGTGCCGGGAGCGATGGAGGGGCGTGTGGATATGGGAAAGCGGTGGAGCAACTGCCATTTTCGTCGTTAATTGCGGCGGGAGGCCCTTCCTTGTACAAGTCCGGCAAGGCCTGTGGAGCTTGTTATCAGGTGAAGTGCTCGGGAGAGGCTGCATGCTCAGGGAATCCGGTGACGGTGGTTATAACTGATAGTTGTCCCGGCGGCTCGTGTGCTTCCGACGCCGTCCACTTCGACCTCAGCGGCACTGCTTTTGGTGCTATGGCTGCAACTGGCCGTGGCGATGAACTCCGCAATCTCGGCGTTTTGCAGATTCAACATAAAAGGGTGGAATGCAATTATCCGGGAACGTCGATCAACTTCATCGTGGACTCGGGGTCGAACCCGAACTATTTCGCAGCTGTGATCGAATACGAAGATGGAGATGGAGAACTTGGTTCAGTGGAGTTGAAACCTCAAGACTCGTACTCATGGATTCAAATGAAGCAGTCATGGGGTGCAGTTTGGAAACTGGACTCCGGCTCCGCCCTTCACGCTCCCTTCTCCCTCAGGCTCACCGCCCTCGACTCCGGTAAGACCGTGGTCGCCAACAATGTAATCCCGGCCGGGTGGCAGCCGGGGCAGACTTATAGATCTGTGGTCAACTTCGACACTTAA 822 54.01 MGHFHHYSLFIFAAILSLSLTTPCFCFHPKSFNVSKYQSYDSDWSPAVATWYGSPDGAGSDGGACGYGKAVEQLPFSSLIAAGGPSLYKSGKACGACYQVKCSGEAACSGNPVTVVITDSCPGGSCASDAVHFDLSGTAFGAMAATGRGDELRNLGVLQIQHKRVECNYPGTSINFIVDSGSNPNYFAAVIEYEDGDGELGSVELKPQDSYSWIQMKQSWGAVWKLDSGSALHAPFSLRLTALDSGKTVVANNVIPAGWQPGQTYRSVVNFDT 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44600080 44601243 + Maker00031725 Lcy11g2114 648015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g2114 273 CDD DPBB_EXPB_N 44 167 - -
Lcy11g2114 273 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lcy11g2114 273 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576(InterPro)
Lcy11g2114 273 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576(InterPro)
Lcy11g2114 273 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576(InterPro)
Lcy11g2114 273 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576(InterPro)
Lcy11g2114 273 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576(InterPro)
Lcy11g2114 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 267 IPR007117 -
Lcy11g2114 273 Gene3D - 169 271 IPR036749 -
Lcy11g2114 273 SUPERFAMILY PHL pollen allergen 173 267 IPR036749 -
Lcy11g2114 273 Gene3D - 29 168 IPR036908 -
Lcy11g2114 273 SUPERFAMILY Barwin-like endoglucanases 37 171 IPR036908 -
Lcy11g2114 273 SMART dpbb_1 80 162 IPR007112 -
Lcy11g2114 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 172 IPR007112 -
Lcy11g2114 273 Pfam Lytic transglycolase 81 149 IPR009009 -
Lcy11g2114 273 Pfam Expansin C-terminal domain 174 256 IPR007117 -
Lcy11g2114 273 PRINTS Major pollen allergen Lol pI signature 192 207 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy11g2114 273 PRINTS Major pollen allergen Lol pI signature 222 239 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy11g2114 273 PRINTS Major pollen allergen Lol pI signature 144 159 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy11g2114 273 PRINTS Major pollen allergen Lol pI signature 176 191 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy11g2114 273 PRINTS Major pollen allergen Lol pI signature 122 137 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy11g2114 273 PRINTS Major pollen allergen Lol pI signature 82 93 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lcy11g2114 273 PANTHER EXPANSIN-B3 18 271 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2114 Lcy-Chr11:44600080 Lcy8g1533 Lcy-Chr8:41943956 9.97E-72 dispersed
Lcy11g2114 Lcy-Chr11:44600080 Lcy4g0636 Lcy-Chr4:7569037 6.43E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g2114 - - - 0.0