Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g2121 ATGGGTAAGAAGGGAGGATCCTCCTGGTTGACTGCCGTCAAAAGGGCTTTTAGATCTCCTTCCAAAGACGAAGACGACAAGAAAAGAGACAAGCGGAGATGGATTTTCCGGCGATCCACCAATCTGCACGACACGGACACCCACCAAACGCCGCCTCCGAGTAGGGAGCAGCATGCATCTTCCGAGGCGGCGCTTGCTGTGGCGGTGGCCACTGCCGAAGCTGCTATGGCCACCGCCCAGGCCGCTGTGGAGGTTGCTCGCCTCACCACCAGGCCTTCCAATCACGCCAGAGACCACTACGCTGCAATTGTCATTCAGACTGCTTTTAGAGGCTACCTGGCAAGGAGGGCTCTGCGTGCGCTCAAGGGGCTGGTCAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTCAGAAAGCAGGCTAAGATGACCCTCCGATGCATGCAAGCTCTGGTTCGAGTGCAGGCCCGTGTGCTCGATCAACGGATGAGACTTTCCCATGAAGGCAGCAGGAAATCCACCTTCAGCGACACCAATAGCGTCCTTGGATCGCGTTATCTTCAGAACTTCTCCGATAGGAAATCCGTTTCTCAGTCGAGGGAAGGAAGTAGCGTTGCGGACGATTGGGATGAACGGCCCCACACTATTGAAGAAGTGAAAGCGATGCTCCAACACAGAAAAGAGATTGCAATGAAGCGTGATAGAAATCTCCCCCAAGCCTTCTCCCAACCGGTTCATCCCTTTCTCCATCTCTTTATGCTCTGTTTTGGGCTTCTGTTTCTAATTCGATTGAGGGGTCTTTTCTGTTTTCAGATATGGCGGAGAGGTCGAAGTCCGTCCATGGGCAGCGGAGATGAGCTGGAAGAAAGACCCAAGTGGCTGGATCAATGGAATTCGAGGAAGCCATGGGAAAACAGGGGAAGAGCTTCAACTGATCAGAGAGATCCCATCAAAACAGTCGAAATCGACACCTTCCAGCCCTACTCTCACACATCCACCAACTTCCGAAGAATGACTCAAAATCAACAAAGAACAAATCCACATTCGGGCAGTTCGCCACTCCACAGGACGCAACAAAACGTACCCTCTTTCCACCACTCACCTGCCACGCCCTCCCCGTCCAAAACCAGGCCTCTGCAAGTCCGGTCTGCTAGCCCACGCTTCGTTCGGGACGACAAAAGCGAGAACACATCCCAAACACCGAGCTTAAGGTCAAACTACTACTACAGTGGCAACTTGCTCCAACAAAGTAGGACAGGGGCGAGTAGCAGTTACAGCCAAGGCAATTGTTTGCCCAATTACATGGCGGCCACAGAGTCTGCAAAGGCCCGATTGCGGTCGCAGAGCGCGCCAAGGCAAAGGCCATCGACGCCGGAGAGGGAGAGGGGAGTTGGGTCTGCGAAGAAACGGCTGTCCTTCCCAGTTCCTGATCCAATTGGGTATGGAGTTTACGAGCGGAATTTGAGGAGTCCAAGCTTCAAGAGCGTGAGCGGGACGTACTTGGGGGTGGAGCAGCAATCCAACTATTCATCGTGCTGCACGGACAGCCTCGGCGGAGAGATTTCCCCTTCTTCAACCACCGATCTAAGAAGGTGGCTAAGGTGA 1602 53.87 MGKKGGSSWLTAVKRAFRSPSKDEDDKKRDKRRWIFRRSTNLHDTDTHQTPPPSREQHASSEAALAVAVATAEAAMATAQAAVEVARLTTRPSNHARDHYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHEGSRKSTFSDTNSVLGSRYLQNFSDRKSVSQSREGSSVADDWDERPHTIEEVKAMLQHRKEIAMKRDRNLPQAFSQPVHPFLHLFMLCFGLLFLIRLRGLFCFQIWRRGRSPSMGSGDELEERPKWLDQWNSRKPWENRGRASTDQRDPIKTVEIDTFQPYSHTSTNFRRMTQNQQRTNPHSGSSPLHRTQQNVPSFHHSPATPSPSKTRPLQVRSASPRFVRDDKSENTSQTPSLRSNYYYSGNLLQQSRTGASSSYSQGNCLPNYMAATESAKARLRSQSAPRQRPSTPERERGVGSAKKRLSFPVPDPIGYGVYERNLRSPSFKSVSGTYLGVEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44727359 44729796 + Maker00031430 Lcy11g2121 648022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g2121 533 MobiDBLite consensus disorder prediction 514 533 - -
Lcy11g2121 533 MobiDBLite consensus disorder prediction 339 406 - -
Lcy11g2121 533 MobiDBLite consensus disorder prediction 300 318 - -
Lcy11g2121 533 Pfam IQ calmodulin-binding motif 125 141 IPR000048 GO:0005515(InterPro)
Lcy11g2121 533 Pfam IQ calmodulin-binding motif 101 119 IPR000048 GO:0005515(InterPro)
Lcy11g2121 533 PANTHER IQ-DOMAIN 5-RELATED 9 464 - -
Lcy11g2121 533 MobiDBLite consensus disorder prediction 1 61 - -
Lcy11g2121 533 MobiDBLite consensus disorder prediction 438 470 - -
Lcy11g2121 533 SMART iq_5 120 141 IPR000048 GO:0005515(InterPro)
Lcy11g2121 533 SMART iq_5 97 119 IPR000048 GO:0005515(InterPro)
Lcy11g2121 533 MobiDBLite consensus disorder prediction 339 380 - -
Lcy11g2121 533 Pfam Protein of unknown function (DUF4005) 384 482 IPR025064 -
Lcy11g2121 533 MobiDBLite consensus disorder prediction 300 322 - -
Lcy11g2121 533 ProSiteProfiles IQ motif profile. 98 126 - -
Lcy11g2121 533 FunFam IQ-domain 11 97 148 - -
Lcy11g2121 533 Gene3D - 97 150 - -
Lcy11g2121 533 MobiDBLite consensus disorder prediction 17 44 - -
Lcy11g2121 533 ProSiteProfiles IQ motif profile. 122 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1784 Lcy-Chr10:42199382 Lcy11g2121 Lcy-Chr11:44727359 4.01E-36 dispersed
Lcy11g2121 Lcy-Chr11:44727359 Lcy1g1390 Lcy-Chr1:13454724 1.62E-23 dispersed
Lcy11g2121 Lcy-Chr11:44727359 Lcy4g1146 Lcy-Chr4:23782856 6.56E-152 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g2121 - - - 0.0