Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g2121 ATGGGTAAGAAGGGAGGATCCTCCTGGTTGACTGCCGTCAAAAGGGCTTTTAGATCTCCTTCCAAAGACGAAGACGACAAGAAAAGAGACAAGCGGAGATGGATTTTCCGGCGATCCACCAATCTGCACGACACGGACACCCACCAAACGCCGCCTCCGAGTAGGGAGCAGCATGCATCTTCCGAGGCGGCGCTTGCTGTGGCGGTGGCCACTGCCGAAGCTGCTATGGCCACCGCCCAGGCCGCTGTGGAGGTTGCTCGCCTCACCACCAGGCCTTCCAATCACGCCAGAGACCACTACGCTGCAATTGTCATTCAGACTGCTTTTAGAGGCTACCTGGCAAGGAGGGCTCTGCGTGCGCTCAAGGGGCTGGTCAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTCAGAAAGCAGGCTAAGATGACCCTCCGATGCATGCAAGCTCTGGTTCGAGTGCAGGCCCGTGTGCTCGATCAACGGATGAGACTTTCCCATGAAGGCAGCAGGAAATCCACCTTCAGCGACACCAATAGCGTCCTTGGATCGCGTTATCTTCAGAACTTCTCCGATAGGAAATCCGTTTCTCAGTCGAGGGAAGGAAGTAGCGTTGCGGACGATTGGGATGAACGGCCCCACACTATTGAAGAAGTGAAAGCGATGCTCCAACACAGAAAAGAGATTGCAATGAAGCGTGATAGAAATCTCCCCCAAGCCTTCTCCCAACCGGTTCATCCCTTTCTCCATCTCTTTATGCTCTGTTTTGGGCTTCTGTTTCTAATTCGATTGAGGGGTCTTTTCTGTTTTCAGATATGGCGGAGAGGTCGAAGTCCGTCCATGGGCAGCGGAGATGAGCTGGAAGAAAGACCCAAGTGGCTGGATCAATGGAATTCGAGGAAGCCATGGGAAAACAGGGGAAGAGCTTCAACTGATCAGAGAGATCCCATCAAAACAGTCGAAATCGACACCTTCCAGCCCTACTCTCACACATCCACCAACTTCCGAAGAATGACTCAAAATCAACAAAGAACAAATCCACATTCGGGCAGTTCGCCACTCCACAGGACGCAACAAAACGTACCCTCTTTCCACCACTCACCTGCCACGCCCTCCCCGTCCAAAACCAGGCCTCTGCAAGTCCGGTCTGCTAGCCCACGCTTCGTTCGGGACGACAAAAGCGAGAACACATCCCAAACACCGAGCTTAAGGTCAAACTACTACTACAGTGGCAACTTGCTCCAACAAAGTAGGACAGGGGCGAGTAGCAGTTACAGCCAAGGCAATTGTTTGCCCAATTACATGGCGGCCACAGAGTCTGCAAAGGCCCGATTGCGGTCGCAGAGCGCGCCAAGGCAAAGGCCATCGACGCCGGAGAGGGAGAGGGGAGTTGGGTCTGCGAAGAAACGGCTGTCCTTCCCAGTTCCTGATCCAATTGGGTATGGAGTTTACGAGCGGAATTTGAGGAGTCCAAGCTTCAAGAGCGTGAGCGGGACGTACTTGGGGGTGGAGCAGCAATCCAACTATTCATCGTGCTGCACGGACAGCCTCGGCGGAGAGATTTCCCCTTCTTCAACCACCGATCTAAGAAGGTGGCTAAGGTGA 1602 53.87 MGKKGGSSWLTAVKRAFRSPSKDEDDKKRDKRRWIFRRSTNLHDTDTHQTPPPSREQHASSEAALAVAVATAEAAMATAQAAVEVARLTTRPSNHARDHYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHEGSRKSTFSDTNSVLGSRYLQNFSDRKSVSQSREGSSVADDWDERPHTIEEVKAMLQHRKEIAMKRDRNLPQAFSQPVHPFLHLFMLCFGLLFLIRLRGLFCFQIWRRGRSPSMGSGDELEERPKWLDQWNSRKPWENRGRASTDQRDPIKTVEIDTFQPYSHTSTNFRRMTQNQQRTNPHSGSSPLHRTQQNVPSFHHSPATPSPSKTRPLQVRSASPRFVRDDKSENTSQTPSLRSNYYYSGNLLQQSRTGASSSYSQGNCLPNYMAATESAKARLRSQSAPRQRPSTPERERGVGSAKKRLSFPVPDPIGYGVYERNLRSPSFKSVSGTYLGVEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44727359 44729796 + Maker00031430 Lcy11g2121 648022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g2121 533 MobiDBLite consensus disorder prediction 514 533 - -
Lcy11g2121 533 MobiDBLite consensus disorder prediction 339 406 - -
Lcy11g2121 533 MobiDBLite consensus disorder prediction 300 318 - -
Lcy11g2121 533 Pfam IQ calmodulin-binding motif 125 141 IPR000048 GO:0005515(InterPro)
Lcy11g2121 533 Pfam IQ calmodulin-binding motif 101 119 IPR000048 GO:0005515(InterPro)
Lcy11g2121 533 PANTHER IQ-DOMAIN 5-RELATED 9 464 - -
Lcy11g2121 533 MobiDBLite consensus disorder prediction 1 61 - -
Lcy11g2121 533 MobiDBLite consensus disorder prediction 438 470 - -
Lcy11g2121 533 SMART iq_5 120 141 IPR000048 GO:0005515(InterPro)
Lcy11g2121 533 SMART iq_5 97 119 IPR000048 GO:0005515(InterPro)
Lcy11g2121 533 MobiDBLite consensus disorder prediction 339 380 - -
Lcy11g2121 533 Pfam Protein of unknown function (DUF4005) 384 482 IPR025064 -
Lcy11g2121 533 MobiDBLite consensus disorder prediction 300 322 - -
Lcy11g2121 533 ProSiteProfiles IQ motif profile. 98 126 - -
Lcy11g2121 533 FunFam IQ-domain 11 97 148 - -
Lcy11g2121 533 Gene3D - 97 150 - -
Lcy11g2121 533 MobiDBLite consensus disorder prediction 17 44 - -
Lcy11g2121 533 ProSiteProfiles IQ motif profile. 122 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g2121 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1784 Lcy-Chr10:42199382 Lcy11g2121 Lcy-Chr11:44727359 4.01E-36 dispersed
Lcy11g2121 Lcy-Chr11:44727359 Lcy1g1390 Lcy-Chr1:13454724 1.62E-23 dispersed
Lcy11g2121 Lcy-Chr11:44727359 Lcy4g1146 Lcy-Chr4:23782856 6.56E-152 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1784 . 30 510 IQD Protein Family AT3G52290 54.2 2.7e-102 369.8
Lcy2g1354 . 355 748 IQD Protein Family AT3G22190 58.1 3.0e-93 339.7
Lcy9g1966 . 1 437 IQD Protein Family AT2G26180 60.1 2.0e-118 423.3
Lcy1g0290 . 36 325 IQD Protein Family AT2G33990 51.0 5.3e-64 241.9
Lcy6g0627 . 84 271 IQD Protein Family AT2G33990 57.1 2.1e-52 203.4
Lcy1g0290 . 107 299 IQD Protein Family AT3G15050 57.5 1.8e-56 216.9
Lcy6g0627 . 91 278 IQD Protein Family AT3G15050 60.9 3.4e-55 212.6
Lcy10g1012 . 95 442 IQD Protein Family AT5G13460 52.5 1.7e-75 280.8
Lcy11g2121 . 1 534 IQD Protein Family AT4G00820 54.2 1.9e-129 460.3
Lcy4g1146 . 90 498 IQD Protein Family AT4G00820 57.1 1.7e-106 384.0
Lcy11g2121 . 1 534 IQD Protein Family AT1G01110 50.9 1.2e-123 441.0
Lcy3g2162 . 1 395 IQD Protein Family AT3G16490 52.1 1.2e-72 271.2
Lcy2g0871 . 1 395 IQD Protein Family AT3G16490 51.6 3.1e-68 256.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54