Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g2138 ATGGAAGGATCAGAAAGATCAGGGGTTCACAATTATCAAGTTCAAGTCTCCTTCCTCTCAAATGCACCGCATCCGCAACCCATCCACGAAATGGGATTCGTCCAGTTCGAAGACCACAACCAAGTCTTGAGCTTCTTGGCACCCAACAACGCCGCCACCACTGCCACTGCACCCACCGCCACCATGCCCGCTGCCTTCCCATCGCCTCACGCCCACCTCGTCAGTAGTAGACCTTCTTGGAGTAACGAGCAGGTAGGAACACTGGATCCGAAGCCCGCTCACGACGAGAACTGCACCGGCAGCGCAAGCGACGGCAGCAATTCATGGTGGAGGAACTCGAATGCAGATAAGAATAAAGTGAAGGTGAGGAGAAAGCTGAGAGAGCCACGTTTCTGTTTCCAGACCAGAAGCGATGTAGATGTGCTCGACGATGGCTACAAATGGAGAAAATATGGACAAAAAGTCGTCAAGAACAGCCTTCATCCAAGAAGCTACTATCGTTGCACGCACAGCAACTGCCGAGTGAAGAAGAGGGTGGAGCGACTGTCGGAGGACTGCCGGATGGTGATCACCACCTACGAAGGCAGACACAACCACTCCCCTTGCGACGACTCCAATTCTTCAGAGCACGAACCCTTTACATCTTTCTGA 651 52.84 MEGSERSGVHNYQVQVSFLSNAPHPQPIHEMGFVQFEDHNQVLSFLAPNNAATTATAPTATMPAAFPSPHAHLVSSRPSWSNEQVGTLDPKPAHDENCTGSASDGSNSWWRNSNADKNKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEPFTSF 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 44925625 44928063 + Maker00031574 Lcy11g2138 648039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g2138 216 Pfam WRKY DNA -binding domain 143 199 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g2138 216 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 63 207 IPR044810 GO:0003700(InterPro)
Lcy11g2138 216 SMART WRKY_cls 142 201 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g2138 216 FunFam WRKY transcription factor 57 128 202 - -
Lcy11g2138 216 ProSiteProfiles WRKY domain profile. 137 199 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g2138 216 Gene3D WRKY domain 129 195 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g2138 216 MobiDBLite consensus disorder prediction 197 216 - -
Lcy11g2138 216 MobiDBLite consensus disorder prediction 69 112 - -
Lcy11g2138 216 SUPERFAMILY WRKY DNA-binding domain 134 200 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2004 Lcy-Chr11:43664404 Lcy11g2138 Lcy-Chr11:44925625 7.45E-33 dispersed
Lcy11g2138 Lcy-Chr11:44925625 Lcy1g1097 Lcy-Chr1:9997992 1.68E-47 dispersed
Lcy11g2138 Lcy-Chr11:44925625 Lcy8g0308 Lcy-Chr8:9337545 1.81E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19197 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g2138 - - - 0.0