Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g2138 | ATGGAAGGATCAGAAAGATCAGGGGTTCACAATTATCAAGTTCAAGTCTCCTTCCTCTCAAATGCACCGCATCCGCAACCCATCCACGAAATGGGATTCGTCCAGTTCGAAGACCACAACCAAGTCTTGAGCTTCTTGGCACCCAACAACGCCGCCACCACTGCCACTGCACCCACCGCCACCATGCCCGCTGCCTTCCCATCGCCTCACGCCCACCTCGTCAGTAGTAGACCTTCTTGGAGTAACGAGCAGGTAGGAACACTGGATCCGAAGCCCGCTCACGACGAGAACTGCACCGGCAGCGCAAGCGACGGCAGCAATTCATGGTGGAGGAACTCGAATGCAGATAAGAATAAAGTGAAGGTGAGGAGAAAGCTGAGAGAGCCACGTTTCTGTTTCCAGACCAGAAGCGATGTAGATGTGCTCGACGATGGCTACAAATGGAGAAAATATGGACAAAAAGTCGTCAAGAACAGCCTTCATCCAAGAAGCTACTATCGTTGCACGCACAGCAACTGCCGAGTGAAGAAGAGGGTGGAGCGACTGTCGGAGGACTGCCGGATGGTGATCACCACCTACGAAGGCAGACACAACCACTCCCCTTGCGACGACTCCAATTCTTCAGAGCACGAACCCTTTACATCTTTCTGA | 651 | 52.84 | MEGSERSGVHNYQVQVSFLSNAPHPQPIHEMGFVQFEDHNQVLSFLAPNNAATTATAPTATMPAAFPSPHAHLVSSRPSWSNEQVGTLDPKPAHDENCTGSASDGSNSWWRNSNADKNKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEPFTSF | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 44925625 | 44928063 | + | Maker00031574 | Lcy11g2138 | 648039 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g2138 | 216 | Pfam | WRKY DNA -binding domain | 143 | 199 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g2138 | 216 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 63 | 207 | IPR044810 | GO:0003700(InterPro) | |
Lcy11g2138 | 216 | SMART | WRKY_cls | 142 | 201 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g2138 | 216 | FunFam | WRKY transcription factor 57 | 128 | 202 | - | - | |
Lcy11g2138 | 216 | ProSiteProfiles | WRKY domain profile. | 137 | 199 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g2138 | 216 | Gene3D | WRKY domain | 129 | 195 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g2138 | 216 | MobiDBLite | consensus disorder prediction | 197 | 216 | - | - | |
Lcy11g2138 | 216 | MobiDBLite | consensus disorder prediction | 69 | 112 | - | - | |
Lcy11g2138 | 216 | SUPERFAMILY | WRKY DNA-binding domain | 134 | 200 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g2004 | Lcy-Chr11:43664404 | Lcy11g2138 | Lcy-Chr11:44925625 | 7.45E-33 | dispersed | |
Lcy11g2138 | Lcy-Chr11:44925625 | Lcy1g1097 | Lcy-Chr1:9997992 | 1.68E-47 | dispersed | |
Lcy11g2138 | Lcy-Chr11:44925625 | Lcy8g0308 | Lcy-Chr8:9337545 | 1.81E-46 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19197 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g2138 | - | - | - | 0.0 |