Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy12g0002 | ATGGATATCTCTGCAACAACGCTCTTTTTCCTCACTTTTCTCTCTCTTTCCCTTTACCTTCTCTTCTTCACTTCACAAAAGAAATCCAAAACCCACCAAGGATTCAAACACTTCCCCATACTGGGAACCTTGCCGCTCTTCTTATTGAACCGACACCGTTTTCTCGACTGGTCGACGGAGGTTCTCAGCAGCTGCCCGACCAACACGGCGGTCTTCAAGCGTCCGGGGAAGGTCCACGGCGTCATCACGGCCAACCCACTTGTGGTCGAGCACATATTGAAGACCCAGTTCGAGAACTACCCGAAAGGGGAACGTTTCATTTCGCTTTTGGAGGATTTTTTGGGGCGTGGAATCTTCAACTCCGACGGCGAAATTTGGAGGGTTCAGAGGAAAACGGCCAGTTATGAGTTCAATACGAAATCGCTTAGGAATTTTGTAATGGAGAATGTTAGGGTCGAGATTCAGACGAGGTTGTTGCCTATTTTGGGAAAGGCTTCTGAAACGGAGCGGATTTTGGATCTGCAGGACGTTTTGGAGCGATTTGCGTTTGATAATGTTTGTAAATTGGCTTTTGATTTCGACCCTGGCTGTCTCGGCGGCGATGGCACTGCCGGCGCCGAGTTCATGCGTGCTTTTGAGGACGCCGCTACTCTCAGCTCCGGCAGATTCATGTATGCTTTCCCGGGTTTGTACAAAGTGAAGAAAATTTTGAACATCGGATCAGAGAGAACCCTGAAGGAATCCATAGCCACAGTCCACAAATTTGCAGAAGACATCATACGCTCAAGAATGGAAGAGAAGAAGACAACCCACATCAAAAATGATCAAGATTTATTATCCCGCTTCATGGGAGACGAAGACTATAATTCCCCAGAATTCCTCAGAGACATAATCATAAGCTTCATCCTCGCCGGCCGAGACACCACATCTTCCGCTCTAACATGGTTCTTCTGGATCTTATCCTCCCGACCACACATCCAACAAAAAATCCTCACAGAACTCGAAACGATCCGGTCGAGAACCAGCAAGCAAATCGGAGAAACGTACAGCTTCGACGAACTCCGGGACATGCACTATCTACAAGCAGCACTATCCGAGACTCTCCGGCTGTACCCGCCGGTTCCGGTGGACACAAAAGCCTGCCGAAACGACGACGTCTTACCGGACGGGACGTTTATTGGGAAGAGTTGGTTTGTGACGTACCATACATATGCAATGGGGAGAATGGAGAGCATATGGGGGAAGAATTATGGGGAATTTTTGCCGGAGAGGTGGCTGGAAAATGGGGTTTGTAGGACAGAGAGCCCGTTTCGGTTCCCGGTATTTCACGCGGGACCGAGAATGTGTTTGGGAAAGGACATGGCTTATATTCAAATGAAGTCCATAGCTGCGGCTGTGATGGAGAGGTTTGAGGTGGGAATGGCAGAGAAGGAGAAGAGTCCAAAGCATTTGTTGTCGCTGACGTTGAGGATGGAAAATGGACTGCAGGTGATTGTGAAAAAGAGAGACACGAGTGTGACCATTTGA | 1527 | 48.66 | MDISATTLFFLTFLSLSLYLLFFTSQKKSKTHQGFKHFPILGTLPLFLLNRHRFLDWSTEVLSSCPTNTAVFKRPGKVHGVITANPLVVEHILKTQFENYPKGERFISLLEDFLGRGIFNSDGEIWRVQRKTASYEFNTKSLRNFVMENVRVEIQTRLLPILGKASETERILDLQDVLERFAFDNVCKLAFDFDPGCLGGDGTAGAEFMRAFEDAATLSSGRFMYAFPGLYKVKKILNIGSERTLKESIATVHKFAEDIIRSRMEEKKTTHIKNDQDLLSRFMGDEDYNSPEFLRDIIISFILAGRDTTSSALTWFFWILSSRPHIQQKILTELETIRSRTSKQIGETYSFDELRDMHYLQAALSETLRLYPPVPVDTKACRNDDVLPDGTFIGKSWFVTYHTYAMGRMESIWGKNYGEFLPERWLENGVCRTESPFRFPVFHAGPRMCLGKDMAYIQMKSIAAAVMERFEVGMAEKEKSPKHLLSLTLRMENGLQVIVKKRDTSVTI | 508 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 29970 | 32671 | - | Maker00005576 | Lcy12g0002 | 648065 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy12g0002 | 508 | FunFam | Cytochrome P450 | 26 | 505 | - | - | |
| Lcy12g0002 | 508 | PRINTS | P450 superfamily signature | 449 | 460 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0002 | 508 | PRINTS | P450 superfamily signature | 304 | 321 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0002 | 508 | PRINTS | P450 superfamily signature | 362 | 373 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0002 | 508 | PRINTS | P450 superfamily signature | 440 | 449 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0002 | 508 | CDD | CYP86A | 69 | 495 | - | - | |
| Lcy12g0002 | 508 | SUPERFAMILY | Cytochrome P450 | 25 | 502 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0002 | 508 | Pfam | Cytochrome P450 | 75 | 485 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0002 | 508 | PANTHER | CYTOCHROME P450 | 19 | 495 | - | - | |
| Lcy12g0002 | 508 | Gene3D | Cytochrome P450 | 18 | 507 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0002 | 508 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 442 | 451 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy12g0002 | 508 | PRINTS | E-class P450 group I signature | 361 | 379 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0002 | 508 | PRINTS | E-class P450 group I signature | 293 | 310 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0002 | 508 | PRINTS | E-class P450 group I signature | 313 | 339 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0002 | 508 | PRINTS | E-class P450 group I signature | 449 | 472 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0002 | 508 | PRINTS | E-class P450 group I signature | 439 | 449 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g0002 | Lcy-Chr12:29970 | Lcy5g0815 | Lcy-Chr5:12712224 | 9.65e-314 | dispersed | |
| Lcy12g0002 | Lcy-Chr12:29970 | Lcy5g0812 | Lcy-Chr5:12554633 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy12g0002 | - | - | - | 0.0 |