Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0015 ATGGCGCTATCGGTGAAGGCTTTTCCGTTCACTGTGGTGAGTCACGTGCTCGCAATCGTGGCGTTGATTTTGGTGCTCATTTGGACCATTCACTTCAGAGGCGGCCTCGCTTGGGAGGCTGTCAATAAGAACCTCATCTTCAATGTAACTCTCTCTCTCTCTCTACCTTCTTCTTCTTCTGGTTTCTTTGTTTGTATGAATAGTCAATTAAGAACTAAGTTTGCAAAGATTCATCCTGTTCTTATGCTACTGGGATTGATCATTATAGGAGGCGAAGCAATAATTAGTTATAAATCACTGCCGCTGAGAAAGGAAGTGAAGAAAGTGATACATATGGTGCTACACGGCGTGGCATTGATACTGGGTATTGTGGGGATCAGCGCTGCATTCAAGAACCATAATGAAAGTGGGATCGCTAATCTTTACAGCTTGCATTCTTGGATTGGAATTGGCGTAATTGTCCTGTATGGCATCCAGTGGGTGTACGGGTTGGTGACATTCTTGTACCCAGGAGGATCCTTGGATCTCCGAAGAGCGTCACTTCCATGGCACGTGGTATTGGGCATGATGATTTACATATTAGCCGTGGGCAACTCGGCGCTTGGGTTTCTAGAGAAGCTGACGTTTCTGGAGAGCTCTGGGGTCGCCAAATATGGCCCTGAGGCCTTCCTCGTCAACTTCACCGCCATCACCACTCTCATTTTTGCACTCTTTGTCATTCTCTCTGTTATTTCACAGCCCAAACCTCAAGACGATGACCACGCCGCCTATTCCGCTATATGA 783 46.74 MALSVKAFPFTVVSHVLAIVALILVLIWTIHFRGGLAWEAVNKNLIFNVTLSLSLPSSSSGFFVCMNSQLRTKFAKIHPVLMLLGLIIIGGEAIISYKSLPLRKEVKKVIHMVLHGVALILGIVGISAAFKNHNESGIANLYSLHSWIGIGVIVLYGIQWVYGLVTFLYPGGSLDLRRASLPWHVVLGMMIYILAVGNSALGFLEKLTFLESSGVAKYGPEAFLVNFTAITTLIFALFVILSVISQPKPQDDDHAAYSAI 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 463161 467909 - Maker00038953 Lcy12g0015 648078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0015 260 Pfam Eukaryotic cytochrome b561 77 209 IPR006593 -
Lcy12g0015 260 CDD Cyt_b561_ACYB-1_like 76 211 - -
Lcy12g0015 260 PANTHER CYTOCHROME B561-RELATED 4 50 IPR043205 GO:0016491(InterPro)|GO:0016491(PANTHER)
Lcy12g0015 260 Gene3D - 2 255 - -
Lcy12g0015 260 SMART 561_7 77 203 IPR006593 -
Lcy12g0015 260 ProSiteProfiles Cytochrome b561 domain profile. 13 244 IPR006593 -
Lcy12g0015 260 FunFam Cytochrome b reductase 1 59 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1591 Lcy-Chr10:40319886 Lcy12g0015 Lcy-Chr12:463161 6.30E-49 dispersed
Lcy12g0015 Lcy-Chr12:463161 Lcy7g0409 Lcy-Chr7:3512643 9.09E-38 dispersed
Lcy12g0015 Lcy-Chr12:463161 Lcy10g2110 Lcy-Chr10:45159516 2.00E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0015 K08360 - csv:101209308 358.221