Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0025 ATGGGTGTTCCAACTCTCACCGGACTGTTCAAAAGCGTCGCCGGAGACTTCCCTGACCGGACCGCCTTATCCCTATCTGGAAAGTTCCATCTCTCACATGCCCGCCTCCAACACCTCGTAGATTCCGCCGCCTCAAAACTCGTCGGCGGAGGCGTCAAACCCGGCCACGTCGTGGCCCTCGTCTTTCCCAACACCGTCGAGTTTGTGATTATGTTTTTGGCCGTGATCCGAGCTCGAGCGACGGCGGCGCCGCTCAACGCCGCCTACACGGCGGAGGAGTTCGAGTTTTACTTATCGGACTCCGAATCGAAGCTTCTCGTAACCTCAATAGAAGGCAACGGCCCAGCTGAAACGGCGGCGTCTAAGCTCAAAATCCAACACGTGACCGCAGAGCTCCCCGATGCACGTGCCGAGTTGATTCTTTCCTTGACTCAGTCCTCCGAGTCCGACTCAGTTGGGGACGTCGTCAACGAGGGATCCGACGTATCGTTATTCCTTCACACGTCGGGCACCACGAGCCGCCCCAAAGGCGTGCCATTGACTCAGTTTAATCTGGCCTCATCGGTTCACAACATTAAATCGGTTTACAAACTCACCGAGTCCGACTCGACCGTGATTGTGCTCCCTTTGTTCCACGTCCACGGTCTGATGGCCGGGTTACTGAGTTCACTAGCCGCCGGAGCGGCCGTGGCACTGCCGGCGGCAGGGAGATTCTCGGCGTCGACGTTCTGGCCCGACATGATCCAATACAAGGCCACGTGGTACACCGCCGTGCCTACGATCCACCAGATCATATTGGACCGGCACTCGAGCAAACCGGAGACTGTTTACCCGAAGCTCCGGTTCATTAGGAGCTGCAGTGCGTCGTTGGCACCGGCAATCTTGAAGCGGTTGGAAGAGGCGTTCGGGGCTCCGGTTCTTGAGGCGTACGCGATGACGGAGGCGAGCCATTTGATGTCGTCGAACCCGTTGCCGGAGGAGGGTCCGCACAAGGCGGGGTCGGTGGGAAAAGCGGTGGGCCAAGAAATGGCGATACTGGATGAAGAGGGCGTGGTTCAAGAGGCGAATGTGAAAGGGGAAGTGTGCATTAAGGGTCCGAATGTGACGAATGGATACAAGAGCAACCCGGCAGCGAACGAAGAAGCGTTCCGGTTCGGGTGGTTCCATACCGGAGATATTGGGTACTTCGATTCGGATGGGTATTTGCATCTTGTTGGTCGGATCAAGGAGCTCATCAACCGTGGAGGGGAAAAGATATCGCCGATAGAAGTGGACGCAGTGCTGTTGGCTCATCCGGACGTGGCTCAGGCTGTCGCATTTGGTGTTCCAGACCACAAGTATGGGGAGGAGATAAATTGTGCGATAATCCCAAGGGAAGGATCAAAGATTGGGGAGGAAGATGTATTGAAGTTGTGCAGAAGCAATCTGGCTGCCTTCAAAGTCCCAAAGAAGGTCTTCCTCACAGATTCATTGCCCAAGACTGCTTCTGGCAAAATACAACGCCGAATCGTCGCCGCCCATTTCCTTCACCAAATATCTTGA 1542 55.77 MGVPTLTGLFKSVAGDFPDRTALSLSGKFHLSHARLQHLVDSAASKLVGGGVKPGHVVALVFPNTVEFVIMFLAVIRARATAAPLNAAYTAEEFEFYLSDSESKLLVTSIEGNGPAETAASKLKIQHVTAELPDARAELILSLTQSSESDSVGDVVNEGSDVSLFLHTSGTTSRPKGVPLTQFNLASSVHNIKSVYKLTESDSTVIVLPLFHVHGLMAGLLSSLAAGAAVALPAAGRFSASTFWPDMIQYKATWYTAVPTIHQIILDRHSSKPETVYPKLRFIRSCSASLAPAILKRLEEAFGAPVLEAYAMTEASHLMSSNPLPEEGPHKAGSVGKAVGQEMAILDEEGVVQEANVKGEVCIKGPNVTNGYKSNPAANEEAFRFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLAHPDVAQAVAFGVPDHKYGEEINCAIIPREGSKIGEEDVLKLCRSNLAAFKVPKKVFLTDSLPKTASGKIQRRIVAAHFLHQIS 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 532924 535533 - Maker00038573 Lcy12g0025 648088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0025 513 CDD FACL_fum10p_like 18 505 IPR045310 GO:0016874(InterPro)
Lcy12g0025 513 Pfam AMP-binding enzyme 12 372 IPR000873 -
Lcy12g0025 513 ProSitePatterns Putative AMP-binding domain signature. 165 176 IPR020845 -
Lcy12g0025 513 Gene3D - 408 509 IPR045851 -
Lcy12g0025 513 Gene3D - 5 407 IPR042099 -
Lcy12g0025 513 FunFam Peroxisomal-coenzyme A synthetase 5 407 - -
Lcy12g0025 513 SUPERFAMILY Acetyl-CoA synthetase-like 5 510 - -
Lcy12g0025 513 Pfam AMP-binding enzyme C-terminal domain 423 498 IPR025110 -
Lcy12g0025 513 PANTHER ACYL-COA SYNTHETASE 5 510 - GO:0006631(PANTHER)|GO:0031956(PANTHER)
Lcy12g0025 513 FunFam 4-coumarate--CoA ligase 2 410 511 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0025 K22133 - - csv:101220634 862.448
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0025 Lcy-Chr12:532924 Lcy12g1663 Lcy-Chr12:37040879 4.05E-279 dispersed
Lcy12g0025 Lcy-Chr12:532924 Lcy5g0304 Lcy-Chr5:2882684 1.02E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g689 . Blo15g00167 . . . Bpe07g00938 . . . . . Cma15g01097 . Car15g01008 . . . . . . . . . . Cla01g00434 Cam01g0457 Cec01g0446 Cco01g0468 Clacu01g0456 Cmu01g0435 Cre09g2077 . . . . . . Chy09g01213 . . . Bda06g00683 . . . . Bma12g01121 . . Cmo15g01155 . . . . . Cpe13g00254 Bhi12g00510 . . Lac11g0027 Hepe06g0701 . Lcy12g0025 . . . . . . . . . . Cme09g01750
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002220 2 2 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 3 3 2 63