Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy12g0026 | ATGTTGTTGTTGGTTGAAGGCATTAGCTTAGCTTTAGTGGCCTCATTTATTTTGTTGTTGTTGAGGGTTTTGTTTTGTTGTTGGATTTCACCATTTTTAGTGCACAAAAAGCTTAAGAGAAATGGGTTTGGAGGTCCAACGCCAAGTTTTCCTCTTGGAAATATTAGTGAGATGAAAAGGAACAACCTTATTACTCCTATTTTTGAGTCTTCTCAACTTACCCACAACATACATTCTATCGTCTTTCCCTATTTTTCTCGCTGGCAAACTGCCCATGGGAAAATATTTACATATTGGTTGGGGACAGAGCCATTCTTGTACATTGCAGACCCAGAATTTCTGAAGATATTGTCGACAGAAGTGAAGGCCAAGTTCTGGGGAAAGCCATCTGTGTTCAAACGTGACAGAAAATCAATGTTCGGAAATGGTTTGGTGATGGCTGAAGGAGATGAGTGGGTTCGCCAGAGACATGTCATCACTCCTGCATTTAATCCATCCAACTTGAAGGCAATGTCAAGCTTGATGGTGGAGTCCACCACCCACATGCTGGAGAGATGGGCCAACCTCGTACTCTCCGGCCACCCACAAATCGAAGTCGAAAAAGAAATCACTTCCACCGCCGGCGAAATCATCGCCAAAACCAGCTTCGGAATCGACCACAAAAGCGGCCGACAAGTCTTCCAGAAACTCAGGGATCTCCAGATGACACTCTTCAAAACCAACCGCCTCGTCGGAGTCCCGTTCGCCGGAGTTCTCAACGCCGGCAAGGCCCGAGAGGCGAGACGCCTTGGGGAGGAGATCGACGGGCTGTTTCGGGCGGTGATCACGGCGAGGAGAGAGAATCAGGCGGCGGCGGCGGTGCTGCAGCAGCATGATCTTTTGAGTTTGCTTTTGAAAGAGAGCGGCGAAGAGGGGAAGCTGGGGAGGAAGCTGAGTACGACGGAGCTGATCGACGAGTGTAAGACGTTTTTCTTTGGTGGGCATGAAACGACGGCGTTGGCTCTGACGTGGACACTGCTGCTTTTGGCCATTCATACGGAGTGGCAAACGCAGCTGAGAGAGGAGATCAAACAAGTGCTTGGTGATAAACACACTGACTTTGATTTCACTAAGCTTTCTCAACTCAAAAAGATGGGATGGGTAATGAGCGAGGTTCTACGTCTATACCCATCAGCACCAAACGTACAAAGACAAGCAAGAAGAGACATTACAATAAACGGACTGACAATCCCCAATGGCACCAACATGTGGATCGACGTGGTGGCCATGCATCACGACCAAGCCCTTTGGGGCGACCAGGTCAACGAGTTCCACCCTGAGAGATTCCAAAACGACGCCATTGCTGGCGGCTGCAGCCACAAGATGGGCTATTTGCCATTTGGGTTTGGAGGAAGAATGTGTGTTGGAAGGCACCTGACGTTTATGGAGTATAAGATTGTGTTGACGTTGATTTTGTCTAGGTTTTCCTTCTCCTTGTCTCCTGATTACTGCCATTCGCCTTCCATTATGCTCTCGCTCCGACCTGCCCATGGGTTGCCCCTCATTTTTCAACTACTCCAACATTAG | 1566 | 48.53 | MLLLVEGISLALVASFILLLLRVLFCCWISPFLVHKKLKRNGFGGPTPSFPLGNISEMKRNNLITPIFESSQLTHNIHSIVFPYFSRWQTAHGKIFTYWLGTEPFLYIADPEFLKILSTEVKAKFWGKPSVFKRDRKSMFGNGLVMAEGDEWVRQRHVITPAFNPSNLKAMSSLMVESTTHMLERWANLVLSGHPQIEVEKEITSTAGEIIAKTSFGIDHKSGRQVFQKLRDLQMTLFKTNRLVGVPFAGVLNAGKAREARRLGEEIDGLFRAVITARRENQAAAAVLQQHDLLSLLLKESGEEGKLGRKLSTTELIDECKTFFFGGHETTALALTWTLLLLAIHTEWQTQLREEIKQVLGDKHTDFDFTKLSQLKKMGWVMSEVLRLYPSAPNVQRQARRDITINGLTIPNGTNMWIDVVAMHHDQALWGDQVNEFHPERFQNDAIAGGCSHKMGYLPFGFGGRMCVGRHLTFMEYKIVLTLILSRFSFSLSPDYCHSPSIMLSLRPAHGLPLIFQLLQH | 521 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 541690 | 544869 | + | Maker00038850 | Lcy12g0026 | 648089 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy12g0026 | 521 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 460 | 469 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy12g0026 | 521 | Gene3D | Cytochrome P450 | 32 | 519 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0026 | 521 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 19 | 513 | IPR050665 | GO:0004497(PANTHER) | |
| Lcy12g0026 | 521 | Pfam | Cytochrome P450 | 76 | 498 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0026 | 521 | SUPERFAMILY | Cytochrome P450 | 39 | 516 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0026 | 521 | PRINTS | P450 superfamily signature | 458 | 467 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0026 | 521 | PRINTS | P450 superfamily signature | 326 | 343 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0026 | 521 | PRINTS | P450 superfamily signature | 467 | 478 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0026 | 521 | PRINTS | P450 superfamily signature | 380 | 391 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0026 | 521 | PRINTS | E-class P450 group I signature | 467 | 490 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0026 | 521 | PRINTS | E-class P450 group I signature | 457 | 467 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0026 | 521 | PRINTS | E-class P450 group I signature | 89 | 108 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0026 | 521 | PRINTS | E-class P450 group I signature | 315 | 332 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0026 | 521 | PRINTS | E-class P450 group I signature | 335 | 361 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g0026 | Lcy-Chr12:541690 | Lcy13g0475 | Lcy-Chr13:5635604 | 2.65E-102 | dispersed | |
| Lcy12g0026 | Lcy-Chr12:541690 | Lcy6g0159 | Lcy-Chr6:1496189 | 4.44E-229 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy12g0026 | - | - | - | 0.0 |