Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0027 ATGGTTGGCTGGTCAAGTCGTGGACCAACCGCAGATGGAGATCTTGGTGTTTGTATAAGTGCTCCTGGTGCTGCTGTTGCTCCTGTTCCTACATGGACCCTTCAAAGACGAATGCTTATGAACGGAACCTCTATGGCATCTCCATCTGCCTGTGGAGGCATTGCATTACTCATTAGTGCAATGAAGGCTGAGAACATTACTGTGAGTCCATATCTCGTGAGGAAGGCTCTTGAGAATACAACCATTCCGGTAGGTTGCTTACCACAAGATAAATTATCCACTGGACAGGGGCTCATGCAAGTTGACAAGGCATATGAATATATAAAGAAGTCCCAGAATGTTCCATATGTTTGGTATAACGTGAAGATTAATCAATCTGGAAAATCATCACTCGGTTCCTTCATATTCTTTATCTCTCTTGGCAACAAGCTTCTGTTTAAGTTAAGACTTACAGAAAGCAGCTACACTAAAGCTTTCTGGGATGATATCTTGTCAGAGGTTTCATGGTTTGTTGCTTTACCCAATAACCCTCTTAGCCTTCTTCATCTGACTCTTGTGGGTCACAGGCCTAGGTGGTCTTGGACAGTACAAATTGAACCCCAGTTTCATGAAGATGCGAATAACTTAGAAGATTTGGTCCCTTTTGAGGAGTGTATTGCGTTGCATTCCAGTGAAAAAACAGTTGTCACTGTTCCTGATTATTTGCTTCTCACACATAATGGACGCAGCTTCAATAAATGGACTATACAGAATTGTGATCAGTCAAATATTGCAAAGCCCCGAAGTTGTGTAGTGGTTGATCCTTCCAATCTTAGTGATGGCCTGCACTATTATGAAATCTATGGTATTGATTGCAAGGCTCCATGGCGAGGTCCTCTTTTCAGAATCCCGGTAACTATAACGAAGCCAGTAGTTGTGGTGGATCGCCCCCCAATAGTTTCTTTTCCAAGAATGTCATTTCTACCAGGCCATATAGAACGGAGGTTTATAGAGGTACCGCGTGGTGCTAGTTGGGTTGAAGCAACCATACAAACAACAGGATTTGACACAACAAGGAAATTTTTTATTGACACTGTCCAGATTTTGCCCTTGAAGAGGCCTTTGAAGTGGGAGAGTGTGGTAACATTCTCGTCTCCTGCTTCCAAAAGTTTTTGTTTTCCTGTTGTGGGTGGCCAGACTATGGAATTAGCAATTGCTCAATTTTGGTCAAGTGGCATTGGAAGTAGGGAATCATCACTTGTAGATTTTGAGGTAACATTCCACGGGATTATTACCAATAAAAATGAAATAGTGCTTGATGGAAGTGAGGCGCCTGTTAGAATTGATGCTGAAGCTTTGTTGGCATCAGAAAAACTTACTCCTGCTGCCATCCTGAACAAGATAAAAATTCCATATCGGCCATGTGAAGCCAAACTTTGCACACTGCCTACAAATCGTGATAGATTGCCTTGTGGAAAACAGATTTTATCACTGACACTAACTTACAAGTTCAAATTAGAAGATGTTGCTGAAGTGAGACCTGTTATTCCATTGTTTAATGACCGCATATATGACAACAAATTTGAGTCTCAATTTTATATGATCTCTGACGCGAATAAGCGTATTTATGCGACGGGTGATGCATACCCAAAGTTTAAAAAACTTCCCAAGGGAGAATACAATTTACGGCTACATATAAGGAAGTGTCGCAGGCATGAGGACGTTCAATGTTTGGAAAAAATGAAGCAGTTGGTTGTGTTCATAGAAAGAAAATTGGACGAGAAGGATTCCATTAAATTGAGCTTTTTCTCTCAACCCGATGGTCCTATGATGGGGAATGGTGCCTACAAATCTTCAGTTTTAGTTCCTGGGAACAATGGTTCATGTGATGCTCTTGAAACCATTACATACTTCCAATACTGGCATACAGTACATCGAGTTGGCTATCTCGAATCCCTGAATATGCTGGAGGCTTTAATTCTCCTCAAGGATCCGTTCTGTTGGGAGCAATCTCATACGCAAAGCTGGCCTGATGAAGACAAGGGTAAAGGTTCTTCTCCAGCTGTGACTAAGCCAATTTCTGAGCGTCTAATGGAAGAGGTTCGTGATGCAAAGATAAAAGTTCTTACAAGTCTAAAACCAGAAACCAATGAAGACTTTTCAGAATGGAAGAAGTTGTGCTCATCCCTTAAGAGTGAATATCCAAAATACACTCCGTTGCTTGCAAAAGTATTGGAAGGTTTGATTTCTCAAAGAAATATCGAAGATAGAAACTGCCATGATGAAGAGGTCATTGATGCTGCAAACGAGGTAGTTGATAGCATTGACACAGATGAGTTGGCCAAGTATTTTGCACTGAAAAATGATCCAGAGGATGAAGACGTGGAGAAAATCAAGAAGAAGATGGAGGCTACCCGGGATCAATTGGCAGAGGCACTATACCAAAAAGGACTAGCATTGGCAGAAATGGAGTCTTTAAAGGTTGAGAAGGCTTCGACACTTGTATCAGAAGATGCAAAAGATGCTGAGAAGTCTGAAGATTCTTTTGAAGAGAATTTCAAAGAACTGAAGAAATGGGTAGATGTCAAGTCCTCTAAGTTTGGAACTCTTGCAGTGTTGCGCGAAAAACGCTGTGGGAGGCTAGGTGCAGCTCTGAAGGTAGTTAATGACGTTATTGAAAATGATGGAGAGCCTCCCAAGAAGAAACTCTATGAACTGAAGCTGTCTTTGCTCGAGGACATTGGTTGGTCTCATTTGGTATCGTATGAAAAGCAATGGATGCATGTACGCTTTCCCACAAGCCTGCCTCCATTTTAA 2796 41.63 MVGWSSRGPTADGDLGVCISAPGAAVAPVPTWTLQRRMLMNGTSMASPSACGGIALLISAMKAENITVSPYLVRKALENTTIPVGCLPQDKLSTGQGLMQVDKAYEYIKKSQNVPYVWYNVKINQSGKSSLGSFIFFISLGNKLLFKLRLTESSYTKAFWDDILSEVSWFVALPNNPLSLLHLTLVGHRPRWSWTVQIEPQFHEDANNLEDLVPFEECIALHSSEKTVVTVPDYLLLTHNGRSFNKWTIQNCDQSNIAKPRSCVVVDPSNLSDGLHYYEIYGIDCKAPWRGPLFRIPVTITKPVVVVDRPPIVSFPRMSFLPGHIERRFIEVPRGASWVEATIQTTGFDTTRKFFIDTVQILPLKRPLKWESVVTFSSPASKSFCFPVVGGQTMELAIAQFWSSGIGSRESSLVDFEVTFHGIITNKNEIVLDGSEAPVRIDAEALLASEKLTPAAILNKIKIPYRPCEAKLCTLPTNRDRLPCGKQILSLTLTYKFKLEDVAEVRPVIPLFNDRIYDNKFESQFYMISDANKRIYATGDAYPKFKKLPKGEYNLRLHIRKCRRHEDVQCLEKMKQLVVFIERKLDEKDSIKLSFFSQPDGPMMGNGAYKSSVLVPGNNGSCDALETITYFQYWHTVHRVGYLESLNMLEALILLKDPFCWEQSHTQSWPDEDKGKGSSPAVTKPISERLMEEVRDAKIKVLTSLKPETNEDFSEWKKLCSSLKSEYPKYTPLLAKVLEGLISQRNIEDRNCHDEEVIDAANEVVDSIDTDELAKYFALKNDPEDEDVEKIKKKMEATRDQLAEALYQKGLALAEMESLKVEKASTLVSEDAKDAEKSEDSFEENFKELKKWVDVKSSKFGTLAVLREKRCGRLGAALKVVNDVIENDGEPPKKKLYELKLSLLEDIGWSHLVSYEKQWMHVRFPTSLPPF 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 546142 576939 - Maker00038810 Lcy12g0027 648090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0027 931 PANTHER PEPTIDASE S8 4 619 IPR050131 GO:0005829(PANTHER)|GO:0008240(PANTHER)
Lcy12g0027 931 Pfam Tripeptidyl peptidase II 446 619 IPR022229 -
Lcy12g0027 931 ProSiteProfiles Serine proteases, subtilase domain profile. 1 105 - -
Lcy12g0027 931 Coils Coil 788 808 - -
Lcy12g0027 931 Gene3D Peptidase S8/S53 domain 1 116 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy12g0027 931 SUPERFAMILY Subtilisin-like 3 106 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy12g0027 931 Pfam TPPII, galactose-binding domain-like 320 404 IPR048384 -
Lcy12g0027 931 Pfam Tripeptidyl-peptidase II, first Ig-like domain 192 300 IPR048383 -
Lcy12g0027 931 Gene3D - 184 312 IPR046940 -
Lcy12g0027 931 Gene3D - 686 931 IPR046939 -
Lcy12g0027 931 Pfam Subtilase family 3 81 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy12g0027 931 ProSitePatterns Serine proteases, subtilase family, serine active site. 42 52 IPR023828 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0027 K01280 - - csv:101220162 1385.55
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g697 Blo06g01128 . . . . . . . . . . Cma15g01096 . Car15g01007 . . . . . . . . . . Cla01g00436 . . Cco01g0470 . . Cre09g2075 . Cone5ag0871 . . . . . . . . . Bda15g00725 . . Bma08g00301 . . . Cmo15g01154 . . . . . Cpe13g00255 Bhi12g00508 . . . . . Lcy12g0027 . . . . . . . . . . Cme09g01554
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005749 1 1 2 3 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 36