Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0036 ATGGATTCTCGTCTTAACTTCTTGCTCTTAGTGACTGCATTTTCATTCTCAAGCTGCCTTGTACAAAGCAATTTGATCAGTGGCCGGAAGGGTTTAAGGGACCAATGGGTTGACAGTGTACCTTTGAGCTACTCAAATCATTCTGGAAGAATCGACCCATCAAGAGTTGTCCAAGTCTCTTGGCGACCAAGGGTTTTCTTGTATAAAGGTTTTCTTTCAGATGAGGAGTGTGATCATCTTATTTCTTTGGCTGCAAATTCAGAAGACAAACCCTCTAGGAACAGTTCTGGTTCTGGGAACACTGTCTCAACCAAATTGCTGAACAGTTCAGGAGCCATTTTAAACACAACAGATGATATCATTGCAAGGATTGAAAATCGAATTGCGGTGTGGACTTTTCTCCCAAAAGATCATAGCATGCCTTTTCAGATTATGCAATACAGGGGTGAAGAAACAAAGCATAAGTACAGTTTTGGCAACAGATCTGCAATGGCGTCCAGTGAGCCTTTGATGGCCACAGTAGTTTTGTATCTCTCAGATTCTGCTAGCGGTGGCGAGATGCTCTTTCCAGAATCAAAGGTAAAGCGCAAATTTTGGTCGGGCCGGAGAAAGAAAAACAACATTCTGAGACCAGTGAAAGGGAATGCAATTCTTTTTTTCTCTGTACATCTTAATGCTTCTCCAGACAAGAGTAGCTACCATACCCGATCTCCAATACTCGATGGGGAGTTGTGGGTTGCTACAAAATTCTTCTACTTAAGACCAACCACTGGGAATAAACACACAGTTGAATCCGATGGAGACGACTGCATTGATGAAGATAAAAGCTGCCCCCAATGGGCTGCCATTGGCGAATGCGAACGAAATGCTGTTTTCATGATCGGTTCTCCAGATTACTATGGAACATGTAGAAAAAGCTGCCATGCATGTCGATGA 936 42.95 MDSRLNFLLLVTAFSFSSCLVQSNLISGRKGLRDQWVDSVPLSYSNHSGRIDPSRVVQVSWRPRVFLYKGFLSDEECDHLISLAANSEDKPSRNSSGSGNTVSTKLLNSSGAILNTTDDIIARIENRIAVWTFLPKDHSMPFQIMQYRGEETKHKYSFGNRSAMASSEPLMATVVLYLSDSASGGEMLFPESKVKRKFWSGRRKKNNILRPVKGNAILFFSVHLNASPDKSSYHTRSPILDGELWVATKFFYLRPTTGNKHTVESDGDDCIDEDKSCPQWAAIGECERNAVFMIGSPDYYGTCRKSCHACR 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 630936 634190 + Maker00038713 Lcy12g0036 648099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0036 311 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 55 253 IPR045054 GO:0004656(PANTHER)|GO:0005783(PANTHER)|GO:0018401(PANTHER)
Lcy12g0036 311 Gene3D q2cbj1_9rhob like domain 55 252 - -
Lcy12g0036 311 SMART ShkT_1 269 311 IPR003582 -
Lcy12g0036 311 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lcy12g0036 311 SMART p4hc 63 252 IPR006620 GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0031418(InterPro)
Lcy12g0036 311 ProSiteProfiles ShKT domain profile. 270 310 IPR003582 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0036 K00472 - - csv:101218968 552.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0323 Lcy-Chr10:6057736 Lcy12g0036 Lcy-Chr12:630936 7.59E-10 dispersed
Lcy11g1471 Lcy-Chr11:38634771 Lcy12g0036 Lcy-Chr12:630936 4.63E-65 dispersed
Lcy12g0036 Lcy-Chr12:630936 Lcy13g0218 Lcy-Chr13:2243325 6.22E-59 dispersed
Lcy12g0036 Lcy-Chr12:630936 Lcy10g1974 Lcy-Chr10:43809854 2.71E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g710 . . . . . . . . . . . Cma15g01089 . Car15g01001 . . . . . . . . . . Cla01g00443 Cam01g0466 Cec01g0455 Cco01g0477 Clacu01g0465 Cmu01g0443 Cre09g2070 Cone1ag1165 Cone5ag0875 . . . . . . . . . . . . . . . . Cmo15g01149 . . . . . Cpe13g00261 Bhi12g00498 . . . . . Lcy12g0036 . . . . . . . . . . Cme09g01561
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014043 0 1 0 0 0 1 1 1 1 1 0 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 24