Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0039 ATGCCTTCATGGTGGGGGAAGCCATCATCAAAAGAAGTAAAGAAGAGCAAGGAAAGTTTTATCGACACATTGCAGAGAAAACTTAGAACCACTGATGGTAAAACAAACAGCAGATCAGGAGGGTCTCCAAGAAATTGTAACGACACAATTTCTGAGCAGGGATCTCGATCTCCTATTCTTTCAAGATCAGTTTCACCTTCCAAACAAGTTTCAAGATGTCAAAGCTTTTCTGAAAGGCCACAAGCACAACCTCTTCCACTTCCTGGTGTGCAGCCACCAATTGTAGGTCGTACGGACTCTGGGATTAGTATTTCACCAAAACCAAGATCTGAAAGGGGCTCCAAGCCATTATCATTTCTACCACTGCCGAGACCAGCATGTATCCCTAGGAGGCCAAACCATGCAGATTTAGATGCAGATCTTGGTGTTGGCTCAGTGTCTAGTGAGAGCTCAATTGATAGCACTGATCTTCCGGATTCACGCCATCGTAGTCCTCAGGCAACTGACTATGATCTTGGGACTAAAACTGCTGCAGGCAGTCCTTCCAGTGTCATTGTCAAGGATCAGTTTTCTATTGTCACCCCACCAAGTTCGCGAGAGGCCAGAAAACCAGCAAATATCTCATTGAGCAACCACATTTTCTCTACATCCCCCAAAAGGAGGCCTTTAAGCAGTCATGTTCCAAATCTTCAAGTTCCATATCATGGGAATTTATGCATTGCTCCAGACAGTTCAATGTCCAGCCCTTCTAGAAGTCCCATAAGGGCATTCAGCACAGAGCAAGTTATTAATAATGCTGTCAGTGCTGGAAAGCTCTATATGGATGTCACTTTTCCTGGATCAGGCCATTGTTCTAGTCCTGGTTCTGGTTACAATTCTGGGCATAATTCTATGGGTGGTGATTTGTCAGGGCAGTTATTTTTGCAACAAAGCCGGGGTAGCCCGGAATATTCCCCAGCACCCAGTCCCAGAATGACCAGTCCTGGCCCTAGCTCCAGAGTCCATAGTGGTGCAGTGACCCCAATTCATCCAAGGGCGGGAGGGATACCAACTGAGTCACTGACAAGCTGGCCTGATGAAAAGCAAACTCACCGCTTGCCTCTTCCTCCGGTTGCAATTTCCAATGCTCCTTTTTCTCATTCCAATTCAGCTGCAACATCTCCATCTGTCCCAAGAAGTCCTGGAAGGGCTGATAATCCAGCAAGCCCAGGCTCCCGTTGGAAAAAGGGGAAGCTTTTGGGTAGAGGCACTTTTGGGCATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTCACATTATTTTCAGATGATGCAAAGTCCAAGGAGAGTGCCAAGCAATTAATGCAATATTATGGATCTGAAACGGTTGGCGACAGGCTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAGGAATATGGACAGCTTGGTGATTCAGCACTTCGTAGTTATACTCAGCAAATATTGTCCGGGCTTGCATATTTACATGCTAAAAGTACTGTTCACAGGGACATCAAAGGAGCAAATATACTTGTTGATCCCACTGGGCGTGTTAAGTTGGCCGACTTTGGGATGGCAAAACATATCACTGGGCAATCATGCCCTTTGTCTTTTAAAGGCAGCCCGTACTGGATGGCACCTGAGGTCATAAAAAACTCAAATGGTTGTAACCTTGCGGTGGATATTTGGAGCCTTGGATGCACTGTTTTGGAGATGGCAACTACAAAACCTCCTTGGAGTCAATATGAGGGAGTCGCTGCAATGTTTAAGATTGGAAACAGCAAAGAACTTCCTGAAATCCCGGATCATCTTTCACATGATGGAAAAGACTTTGTTAGACAATGTCTGCAACGGAATCCAGCTCATCGTCCTACGGCTGCTCAGCTTTTGGATCATCCTTTTGTCAAATATGCTGCACCTCTTGAAAGACCCATTTTGGGTTCCGAACATCCAGATCCAACTCCAGGAATTACAAATGGAGTAAGAACTCTGGGTATTGAGCCAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTCATTCATCTAGACTCTCGACAGCTGCTTTTCTTTCCAGTGAAATCCATATTCCAAGGAACCTATCATGTCCTGTTTCGCCCATTGGAAGCCCTCTGGTGCACTCTAGGTCGCCACAACATCCCAGTGGAAGAATGTCTCCGTCGCCCATCTCTAGCCCTCGGAACATGTCAGGTGCATCCACTCCTCTCACGGGAGGAAGCGGTGCCATTCCACACCAGCACCTCAAACAATCACTGTACCTACAGGAAGGTTTTGGGAGCTTGCCAAAGCCTTCAATAGGCCCCTATAGTAATGGCCCTTCCTATCACGATTCAAACCCCGATATCTTTCAGGGGATTCAACCAGGCTCTCACATCTTCTCTGAGCAGTTTGGAAAGCCTGCCTGGGAATTGTATGACGGGCAGGCAGTCTTGGCTGATCGTGTTTCTAGGCAGTTGCTGAGTGATCACATAACAACTCCCTCCCTGGATTTAAGTCCGAGCTCTCTTTTGACCAACCGCAAGTAG 2592 46.41 MPSWWGKPSSKEVKKSKESFIDTLQRKLRTTDGKTNSRSGGSPRNCNDTISEQGSRSPILSRSVSPSKQVSRCQSFSERPQAQPLPLPGVQPPIVGRTDSGISISPKPRSERGSKPLSFLPLPRPACIPRRPNHADLDADLGVGSVSSESSIDSTDLPDSRHRSPQATDYDLGTKTAAGSPSSVIVKDQFSIVTPPSSREARKPANISLSNHIFSTSPKRRPLSSHVPNLQVPYHGNLCIAPDSSMSSPSRSPIRAFSTEQVINNAVSAGKLYMDVTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPAPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPTESLTSWPDEKQTHRLPLPPVAISNAPFSHSNSAATSPSVPRSPGRADNPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQYYGSETVGDRLYIYLEYVSGGSIYKLLQEYGQLGDSALRSYTQQILSGLAYLHAKSTVHRDIKGANILVDPTGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPEIPDHLSHDGKDFVRQCLQRNPAHRPTAAQLLDHPFVKYAAPLERPILGSEHPDPTPGITNGVRTLGIEPGRNPSFLDSDRSAAHSSRLSTAAFLSSEIHIPRNLSCPVSPIGSPLVHSRSPQHPSGRMSPSPISSPRNMSGASTPLTGGSGAIPHQHLKQSLYLQEGFGSLPKPSIGPYSNGPSYHDSNPDIFQGIQPGSHIFSEQFGKPAWELYDGQAVLADRVSRQLLSDHITTPSLDLSPSSLLTNRK 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 651534 664039 + Maker00038769 Lcy12g0039 648102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0039 863 Pfam Protein kinase domain 408 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0039 863 SMART serkin_6 407 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g0039 863 MobiDBLite consensus disorder prediction 34 81 - -
Lcy12g0039 863 MobiDBLite consensus disorder prediction 24 179 - -
Lcy12g0039 863 Gene3D Transferase(Phosphotransferase) domain 1 405 661 - -
Lcy12g0039 863 MobiDBLite consensus disorder prediction 725 766 - -
Lcy12g0039 863 MobiDBLite consensus disorder prediction 283 317 - -
Lcy12g0039 863 MobiDBLite consensus disorder prediction 283 410 - -
Lcy12g0039 863 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524(InterPro)
Lcy12g0039 863 SUPERFAMILY Protein kinase-like (PK-like) 405 735 IPR011009 -
Lcy12g0039 863 MobiDBLite consensus disorder prediction 727 762 - -
Lcy12g0039 863 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 58 651 IPR050538 -
Lcy12g0039 863 MobiDBLite consensus disorder prediction 375 393 - -
Lcy12g0039 863 FunFam Mitogen-activated protein kinase kinase kinase 405 671 - -
Lcy12g0039 863 ProSiteProfiles Protein kinase domain profile. 407 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0039 Lcy-Chr12:651534 Lcy1g1008 Lcy-Chr1:8999405 5.49E-92 dispersed
Lcy1g1154 Lcy-Chr1:10810632 Lcy12g0039 Lcy-Chr12:651534 3.97E-113 transposed
Lcy9g1314 Lcy-Chr9:37904579 Lcy12g0039 Lcy-Chr12:651534 2.35E-48 transposed
Lcy12g0039 Lcy-Chr12:651534 Lcy6g0152 Lcy-Chr6:1424354 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65484 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0039 K20717 - csv:101222716 1615.9