Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0042 ATGGCCCAACCCATATGGTCGGCCTCGGCCTTTTGCCGAGGCCGACCATTTGGCCCGCTTGCGCTGGCCGAGCCCGGTGGCCTCTTTTCGGTCCCTGATGCTCCGAATCGCTCCGGTTCCGCCTGGTTCGCCCCGAAACACCTCCGGATTCCTAAAAACCCTAGGAGGACAAACAGGCATCGGAGGCGGTGTGACCTACACCACGCCGGTGTGCAACGGTTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGTTTCTACAAATTCACTGTTGGTGTCATGTGAAGGTCAGTCTTTAATCAACTCAATGTGGTTATTCAGAAGAAAAGGACCCTCTGGATTTTCGTACTCTTCCACCGCCGAGGACGTTACAGACGGAATCGATGGCACTGGTCTCACCGCCATTGTCACAGGAGCGTCGAGCGGCATTGGCTCTGAAACTGCTCGTGTTCTTGCATTACGCGGTGTCCATGTCATTATGGGTGTTAGGAATATAGAAGCTGGTAAAAATGTGAGAGAAGCCATCGTCAAGGAGAATCCCTCTGCAAAAATTGATGCCATAGAGTTGGATCTTAGCTCCATGGCTTCTGTAAGAAAATTTGCCTCAGATTACCGGTCAGCTGGGTTTCCACTTAACATCCTCATTAACAATGCAGGAATAATGGCTGCCCCTTTTGGACTTTCAAAAGATAACATAGAACTGCAATTTGCAACAAACCACTTAGGCCATTTCCTTTTGACAGATCTACTTTTGGAAAATATGAAGAAAACTGCCAGTAAAAGTGAGAAGGAAGGAAGAATTGTAAACGTTTCCTCAGAAGCTCACCGTTACACATATCCTGAAGGCATCCGATTCGACGGAATTAATGATGAATCAAGGTACAGTAAGATGCATGCTTATGGCCAATCAAAGTTATCTAATGTGCTGCATGCCAATGAACTTACAAGACGTTTCAAGGAGGAAGGAGTAAACATAACTGCAAACTCACTTCACCCAGGAATAATTGCCACGAATCTTTTCCGCCACTTCAATTTTGGCAATGGTATAGCAAACACTGTTGGCAAACTCGTATTTAAAAATGTTCAACAGGGTGCAGCAACAACCTGCTATGTGGCATTGCATCCACAATTGAAGGGAGTGAGTGGTGAATATTTTCTGAATAGTAACCTACACGAGACAAGCCAACATGGCCAGGATGTTGACCTGGCTAAGAAACTTTGGGATTTTACCACTAACTTACTCAAATAA 1248 46.23 MAQPIWSASAFCRGRPFGPLALAEPGGLFSVPDAPNRSGSAWFAPKHLRIPKNPRRTNRHRRRCDLHHAGVQRFLLVLQVTSSPVSTNSLLVSCEGQSLINSMWLFRRKGPSGFSYSSTAEDVTDGIDGTGLTAIVTGASSGIGSETARVLALRGVHVIMGVRNIEAGKNVREAIVKENPSAKIDAIELDLSSMASVRKFASDYRSAGFPLNILINNAGIMAAPFGLSKDNIELQFATNHLGHFLLTDLLLENMKKTASKSEKEGRIVNVSSEAHRYTYPEGIRFDGINDESRYSKMHAYGQSKLSNVLHANELTRRFKEEGVNITANSLHPGIIATNLFRHFNFGNGIANTVGKLVFKNVQQGAATTCYVALHPQLKGVSGEYFLNSNLHETSQHGQDVDLAKKLWDFTTNLLK 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 666647 676117 - Maker00038535 Lcy12g0042 648105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0042 415 CDD retinol-DH_like_SDR_c_like 131 407 - -
Lcy12g0042 415 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 131 391 IPR036291 -
Lcy12g0042 415 PANTHER RETINOL DEHYDROGENASE 111 414 - -
Lcy12g0042 415 Gene3D - 125 415 - -
Lcy12g0042 415 Pfam short chain dehydrogenase 133 282 IPR002347 -
Lcy12g0042 415 PRINTS Glucose/ribitol dehydrogenase family signature 323 340 IPR002347 -
Lcy12g0042 415 PRINTS Glucose/ribitol dehydrogenase family signature 209 220 IPR002347 -
Lcy12g0042 415 PRINTS Glucose/ribitol dehydrogenase family signature 133 150 IPR002347 -
Lcy12g0042 415 PRINTS Glucose/ribitol dehydrogenase family signature 259 275 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0042 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0042 Lcy-Chr12:666647 Lcy6g0867 Lcy-Chr6:8755969 3.42E-151 dispersed
Lcy12g0040 Lcy-Chr12:658925 Lcy12g0042 Lcy-Chr12:666647 7.60E-89 proximal
Lcy12g0041 Lcy-Chr12:662810 Lcy12g0042 Lcy-Chr12:666647 5.20E-54 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1173 Cone5ag0880 Cone14ag0073 Cone15ag0076 . . Chy09g01373 . . . . . . . . Bma12g01115 . . . . . . . . . Bhi12g00030 . . Lac11g0045 . . Lcy12g0042 . . . . . . . Lsi09g00093 . . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126