Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0050 ATGAAGGGTGTAATCTCAGTTTTCCCAAATGAAAGAAAACAACTCCACACAACAAGATCATGGGACTTCATGGGTTTGTCTCAACAAGCCAGTCGAGTTCCATATGTGGAAAGTGATATCATCGTTGGAGTACTCGACAGTGGCATTTGGCCGGAATCCCCTAGTTTCCTCGACCAAGGATATGGCCCGCCGCCGTCCAAGTGGAAGGGTACTTGTGAAGTCTCAGCCAATTTCTCTTGCAACAATAAAATCATTGGAGCTCGATCATATCGTAGCAATGGTTTGTATCCAACAAGTGACATTCGCGGTCCAAGAGATTCAGATGGCCATGGGACGCACACGGCATCGACAGTGGCGGGCGGGTTGGTCGGGCGAGCGAGTATGGTTGGTCTCGGCTCCGGCACGGCAAGGGGTGGAGTCCCATCGGCACGAATCGCGGCCTACAAAGTATGTTGGTCGGATGGTTGCTATGATGCCGACATTCTTGCTGCATTCGACGACGCCATTGCTGATGGGGTTGACATCATCTCTTTCTCCATTGGAGCATTCGTGACTCGAGATTACTTCAATGACTCCATGGCCATTGGAGCTTTCCATGCAATGAAGAATGGAATCCTTACGTCAATGTCCGCTGGCAACGACGGTCCAACCCCTTTCACAATTAAAAACTTCTCACCTTGGTCTCTATCGGTGGCGGCTAGCACTACCGATAGGAAATTTTTTACTCAAGTTCAACTCGGAGATGGAACAAGTTTCAAGGGAGTCTCCATCAATACATTTGATCTAAATGGAACACAATATCCGTTGGTATATGCGGGAAATGTACCAAATGTAACCGCTGGCTTCGTTGGATCCATGTCAAGGGAGAACTCAGTGGATAGGGAGTTGGTGAAGGGTAAAATTGTCCTATGTGATGGTTTTGTACCAAGAAATGTGGGTTCTTTAAAGGATGCAATTGGAATTATAATGCAGGACACAACTCCAAAAGATCTCACATTCTCTTTTCCCTGGCCTGCCTCCCACCTTGGCCCACAAGAAAGACATCTCATTTCTTCCTATGTCAACTTAAATAGGGGTCCAAATCCAATAACTCCCGACATTCTTAAGCCAGATTTGACTGGTCCAGGAGTTGAAATTCTTGCTGCATGGTCTCCTATAGCTCCACCCTCGGGAGATGAATATGACAATAGAAATATTTCTTTTAATATCATTTCAGGGACTTCAATGTCTTGTCCACATGCTACAGCAGCTGCTGCATATGTTAAATCATTTCATCCTTCTTGGTCTCCTGCTGCACTTAAATCAGCAATTATGACAACTGCATTTCCTATGAGAGCCGAACTTAACACAGATGCAGAATTTGCATATGGTTCTGGCCATATAAATCCATTAAGTGCAGTGAACCCTGGATTGGTCTACAATGCTACTGAAATTGACTATGTACGATTTCTATGTGGTCAAGGTTCTAGCACCAAGTTGCTCCAGCAAGTCTCTGGAGATAATAGTACTTGTTCTCCAAACAATTCTGACACGGTTTTCGATCTAAACTATCCTTCATTCGCTCTTTCCACATCGATCTCAACCTCAATCAGGCAAATTTATAGAAGAAGGGTCACAAATGTTGGGTCAACAAATTCGACATATAAAGCTACAATTTTTGCTCCTTTAGGGCTTAATATTAAAGTGAGTCCTTCTATTCTTTCATTCAAGGCTTTGGGAGAAGAGCAAAACTTTGAGCTTACAATTGAAGGAAGTATTGATAGAAGCATTGCATCAGCTTCCTTGGTGTGGGATGATGGTCAACACAAAGTCAGGAGTCCTATAACAGTCTTTGATGCTAATATGTTGGTTAATTAG 1857 44.0 MKGVISVFPNERKQLHTTRSWDFMGLSQQASRVPYVESDIIVGVLDSGIWPESPSFLDQGYGPPPSKWKGTCEVSANFSCNNKIIGARSYRSNGLYPTSDIRGPRDSDGHGTHTASTVAGGLVGRASMVGLGSGTARGGVPSARIAAYKVCWSDGCYDADILAAFDDAIADGVDIISFSIGAFVTRDYFNDSMAIGAFHAMKNGILTSMSAGNDGPTPFTIKNFSPWSLSVAASTTDRKFFTQVQLGDGTSFKGVSINTFDLNGTQYPLVYAGNVPNVTAGFVGSMSRENSVDRELVKGKIVLCDGFVPRNVGSLKDAIGIIMQDTTPKDLTFSFPWPASHLGPQERHLISSYVNLNRGPNPITPDILKPDLTGPGVEILAAWSPIAPPSGDEYDNRNISFNIISGTSMSCPHATAAAAYVKSFHPSWSPAALKSAIMTTAFPMRAELNTDAEFAYGSGHINPLSAVNPGLVYNATEIDYVRFLCGQGSSTKLLQQVSGDNSTCSPNNSDTVFDLNYPSFALSTSISTSIRQIYRRRVTNVGSTNSTYKATIFAPLGLNIKVSPSILSFKALGEEQNFELTIEGSIDRSIASASLVWDDGQHKVRSPITVFDANMLVN 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 748850 753880 - Maker00038495 Lcy12g0050 648113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0050 618 CDD Peptidases_S8_3 13 441 IPR034197 -
Lcy12g0050 618 FunFam Subtilisin-like protease SBT1.5 39 261 - -
Lcy12g0050 618 Pfam Fibronectin type-III domain 514 610 IPR041469 -
Lcy12g0050 618 CDD PA_subtilisin_like 244 360 - -
Lcy12g0050 618 Gene3D - 484 612 - -
Lcy12g0050 618 Pfam Subtilase family 38 457 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy12g0050 618 ProSiteProfiles Serine proteases, subtilase domain profile. 20 467 - -
Lcy12g0050 618 SUPERFAMILY Subtilisin-like 15 471 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy12g0050 618 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 2 355 IPR045051 -
Lcy12g0050 618 Gene3D Peptidase S8/S53 domain 39 236 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy12g0050 618 Gene3D Peptidase S8/S53 domain 358 480 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy12g0050 618 Gene3D - 237 355 - -
Lcy12g0050 618 ProSitePatterns Serine proteases, subtilase family, serine active site. 406 416 IPR023828 -
Lcy12g0050 618 PRINTS Subtilisin serine protease family (S8) signature 106 119 IPR015500 -
Lcy12g0050 618 PRINTS Subtilisin serine protease family (S8) signature 37 56 IPR015500 -
Lcy12g0050 618 PRINTS Subtilisin serine protease family (S8) signature 405 421 IPR015500 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0050 Lcy-Chr12:748850 Lcy9g0404 Lcy-Chr9:11378610 3.06e-317 dispersed
Lcy7g1189 Lcy-Chr7:14018938 Lcy12g0050 Lcy-Chr12:748850 6.47E-50 dispersed
Lcy12g0049 Lcy-Chr12:741855 Lcy12g0050 Lcy-Chr12:748850 0 tandem
Lcy12g0050 Lcy-Chr12:748850 Lcy6g0869 Lcy-Chr6:8786657 2.36E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0050 - - - 0.0