Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0059 ATGAAGAAGGTGATTGTGAAATTGGATGTTCAAGATGATAAATCTAAGCAAAAAGCTATGAGCACTGTGTCTAGTCTATCAGGAGTGAACTCAATCTCAATGGACATGAAAGAGAAGAAACTGACAGTAACAGGGGATGTAGATCCAGTGGTGATAGTGAGCAAACTGAGGAAAATTTGTCACACAGTGATAGTTTCAGTTGGACCAGAGAAAGAAGAGAAGAAACCAGAGGCAAAGAAAGATGAGCCTAAGAAGGAAGATCCCAAGAAGGCAGCTGAGGAAAAGAAGAAAGAAGAACAAAGGATTGCTGAGGCGATTTTAGGCGTTCAGAGGCGATTCGGGCTGAACCAGGTGGAACCGGAGTGGCCAAAGGCACTAGAGACCGAATGGAGGGGAGGGAACTCGACCCACACGAGTGAGTCGAGCATGGGATCCCTTCGGCTTGCTCTCTTCCAGGGTCCGCTTCCTGGACAGCACAACACAGACCTGAAGACGCGACCAGAAGGTAGATCTCAAAGGAGAGGCGAGCTGAAGGGGTTGGGCCAAGCCCGTGGGCCATGCTCGGTCGAGGCCGAGGCCGACCCTCTCGGCCCACAGCGTGGGCCGAGTCTTTCCCCCTCCGCTTGGCTCCTAGAGTCCCTTTGCCGCCCCGATTCCACCTGGTTCAACTCGAATCGTCTCCAAACGCTTAGAAACCTTAAGGCTGGAAAAGGTCACGTCTTCCCCCTAGCTAATACAAATTTACCGTTGGTGTCACGTGAAGGT 765 51.24 MKKVIVKLDVQDDKSKQKAMSTVSSLSGVNSISMDMKEKKLTVTGDVDPVVIVSKLRKICHTVIVSVGPEKEEKKPEAKKDEPKKEDPKKAAEEKKKEEQRIAEAILGVQRRFGLNQVEPEWPKALETEWRGGNSTHTSESSMGSLRLALFQGPLPGQHNTDLKTRPEGRSQRRGELKGLGQARGPCSVEAEADPLGPQRGPSLSPSAWLLESLCRPDSTWFNSNRLQTLRNLKAGKGHVFPLANTNLPLVSREG 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 875171 878826 + Maker00038496 Lcy12g0059 648122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0059 255 MobiDBLite consensus disorder prediction 67 99 - -
Lcy12g0059 255 Pfam Heavy-metal-associated domain 9 58 IPR006121 GO:0046872(InterPro)
Lcy12g0059 255 MobiDBLite consensus disorder prediction 66 99 - -
Lcy12g0059 255 Gene3D - 1 73 - -
Lcy12g0059 255 ProSiteProfiles Heavy-metal-associated domain profile. 1 68 IPR006121 GO:0046872(InterPro)
Lcy12g0059 255 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 1 94 IPR051863 -
Lcy12g0059 255 MobiDBLite consensus disorder prediction 153 203 - -
Lcy12g0059 255 MobiDBLite consensus disorder prediction 163 177 - -
Lcy12g0059 255 SUPERFAMILY HMA, heavy metal-associated domain 2 64 IPR036163 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0059 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0059 Lcy-Chr12:875171 Lcy13g0758 Lcy-Chr13:11647322 2.49E-22 dispersed
Lcy11g2000 Lcy-Chr11:43592015 Lcy12g0059 Lcy-Chr12:875171 4.51E-24 wgd
Lcy12g0059 Lcy-Chr12:875171 Lcy6g0128 Lcy-Chr6:1153824 1.34E-22 wgd
Lcy12g0059 Lcy-Chr12:875171 Lcy6g0851 Lcy-Chr6:8590363 2.26E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g770 . . Bda05g00094 . Bpe03g00155 . Bma10g01254 Bma14g02042 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0061 . Csa05g00243 . . Blo07g00373 Blo09g00061 . . . . . . . . . . . . . . . Bhi12g00777 . . . . . Lcy12g0059 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000207 7 7 3 10 7 4 5 6 5 3 4 5 6 7 6 6 5 9 5 5 7 5 5 4 6 4 5 12 6 6 175