Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0061 ATGGCTGCCGGAAACGACGACTGGGACCTCTCCGCCGTCGTCCGGAGCTGCAACTCAGCCTCCTCCACTGACCCAACAGCCGCCGCCGCCGCAGAAACCGCCTTGTCTTGTCTCGCTTCTTTAACGTTTGACGACGATCCAAACGACGTCGCATTCTCCTTCTCCGACATCCTTCAGCCCCAACAACAGCCCAACGGCTTCCATGAATTACACCAAGCCTTCGTCTCCTTTCTCCCCAACCCCGCCGCCTCCGCCGCCGTCACCACCGCCTTGCCGGAAATTCCCAACCCCACTCCGAGTCGCCATTTTCGGCAGGGAGTTAAACCCATTCGCCCGCAGCCGGATCCCGGGGCGGCGGCGCTGCAACCGCACCACCGGCAGCCACCGTTCCCGCCGGACTTCCCAAACTCACCAATGCCTCAATCTCACATACCCAAATCGAGAAAAAGGCAAAATCAACAGAAGAGAACCGTATGCCATGTTACTGCAGATAATCTCTCAACAGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCATATCCAAGGAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGAGCAAGAAAGCAAGTTGAACGGAGCAACGCCGATCCGGAGACTTTCATCATCACATACACCGGAGATCACACCCACCCACGTCCAACTCACCGGAATTCCCTTGCCGGAAGCTCCCGAAACAGGTCGTCCTCGTCGATCACCACCAAAAACACCACCACGGGAGATCCCAATCGGTCGTTGACCGCCACCGCTGTCATCGGCTCTTGCTCCTCTCCGGCAGCCTCTCCGATGACACCGCTCGATGGCGGTGGTGAGAAAGAGGCGGAGATGTTTGAAGATATGGTGATCGATAGTGACGATGATGACGACGATGACGATATTCTGATTCCGAACTTGTCTGTGAGAGACGAAATCTTCGTCGGCTTTGAGGAGCTTGGTTGTAGCCCTAGAAGGCGGCCATCGTAA 1005 56.02 MAAGNDDWDLSAVVRSCNSASSTDPTAAAAAETALSCLASLTFDDDPNDVAFSFSDILQPQQQPNGFHELHQAFVSFLPNPAASAAVTTALPEIPNPTPSRHFRQGVKPIRPQPDPGAAALQPHHRQPPFPPDFPNSPMPQSHIPKSRKRQNQQKRTVCHVTADNLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERSNADPETFIITYTGDHTHPRPTHRNSLAGSSRNRSSSSITTKNTTTGDPNRSLTATAVIGSCSSPAASPMTPLDGGGEKEAEMFEDMVIDSDDDDDDDDILIPNLSVRDEIFVGFEELGCSPRRRPS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 922852 924085 + Maker00038445 Lcy12g0061 648124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0061 334 MobiDBLite consensus disorder prediction 92 157 - -
Lcy12g0061 334 SMART WRKY_cls 167 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0061 334 SUPERFAMILY WRKY DNA-binding domain 162 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0061 334 Gene3D WRKY domain 150 221 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0061 334 MobiDBLite consensus disorder prediction 125 139 - -
Lcy12g0061 334 Pfam WRKY DNA -binding domain 169 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0061 334 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 295 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Lcy12g0061 334 MobiDBLite consensus disorder prediction 230 275 - -
Lcy12g0061 334 MobiDBLite consensus disorder prediction 219 288 - -
Lcy12g0061 334 ProSiteProfiles WRKY domain profile. 162 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g0061 334 FunFam WRKY transcription factor 22 150 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0061 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0061 Lcy-Chr12:922852 Lcy1g0091 Lcy-Chr1:837792 1.03E-34 dispersed
Lcy11g2002 Lcy-Chr11:43629554 Lcy12g0061 Lcy-Chr12:922852 2.11E-48 wgd
Lcy12g0061 Lcy-Chr12:922852 Lcy6g0850 Lcy-Chr6:8578878 1.15E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g787 . . . Bda07g01904 . . . . . . Cma02g01084 Cma15g01067 Car02g00825 Car15g00988 . Cpe05g00637 . . . . . . . . Cla01g00089 Cam01g0090 Cec01g0090 Cco01g0091 Clacu01g0088 Cmu01g0090 Cre09g2417 . . . . . Csa05g00101 . . . Blo09g00055 . . . . . . . . Cmo15g01124 . . . . . Cpe13g00277 Bhi12g00774 . . Lac11g0079 Hepe06g0728 . Lcy12g0061 . . . . . . . Lsi09g00076 . . Cme09g01938
Vvi16g912 . . . . Bpe03g00237 . . . . . . . . . Sed08g1878 . . Bhi01g01481 Tan01g0112 Cmetu06g2373 . Hepe07g0068 Mch10g0067 . . . . . . . . . . . . . . . Cme06g01133 . . . . . . . . . . . . . . . Cpe09g00030 . Bhi12g00774 . . Lac11g0079 Hepe06g0728 . Lcy12g0061 . . . . . . . . . Chy06g01210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009671 2 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19207 None None None None Lcy TF