Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0068 ATGGAACAGAAGCACATTTTTCTTTCTGCTTTGGGTGTTGGGGTTGGAGTTGGGGTTGGCCTTGGATTGAGCTCTGGACAAGCTGTTGGGAAATGGGTTGGAGGGAATGGCTCTTCTGATGAGATTACAGGGCAGAAGATTGAACAGGAGCTGATCAGGCAGCTGGTTGATGGCAAAAACAGCAATGTCACTTTTGATGAGTTTCCTTATTATCTAAGTGAGAGGACTCGGGTGCTTTTGATGAGTGCTGCATATGTTCATTTGAAGCACTGCGACATCTCCAAGCACACCAGAAACCTTTCACCAGCAAGTCAGGCAATTTTGCTTTTAGGACCAACAGAACTTTACCACCAAATGCTTGCCAAGGCTCTGGCGCATCATTTCGAGTCGAAGTTGCTGTTGTTAGATGTTTCTGACTTTTCTCTAAAGATGCAGAGCAAATATGGTTGTGCCAAGAAAGAACTTTCATTCAGGAGGTCCATCTCTGAGGCGGCATTGGAGCGAGCGTCTAGTCTTTGGGGTTCCTTCTCAATTCTTCCGACAAGTGGAAATACTAGAGGAAATTTAAGAAGGCAAAGCAGTACTACAGACATCCAATCAAGAAGCTCCGATGGCTCGTCTAATCCTCCAAAACTTCGGAGAAATGCTTCTGCTGCGTCTGATATTAGTAGTATCTCATCAAATTGTGCTTCAACAAATTCAGCTTCTGTCAAGCGAACAAATAGTTGGTGTTTTGATGAGAAACTTTTTCTTCAGTCGCTATACAAGGTTTTGGTGACGGTATCAGAAACTAGTTCCATAATTTTGTATCTGAGAGATGTTGAGAGACTTCTTCTTCAGTCACAAAGGCTACACAATCTGTTCCGTAGATTTCTGGACAAGCTCTCGGGATCAGTTCTAGTACTTGGTTCTCGAATGGTAGACTTGGAAAATGATTGCGGAGATGTTGACGACAGACTGACCAGTTTATTCCGGTATAGTGTTGAAATTCGACCCCCTGAAGATGAGAATCATCTTGTCAGCTGGAAAGCTCAATTGGAAGAGGACATGAAGATGATTCAGTTCCAAGATAATAAAAACCACATTGCTGAAGTACTTGCTGCAAATGATCTTGAATGCGATGACCTCGGTTCAATCTGCCATGCAGACACCATGGTTCTCAGTAATTATATTGAAGAAATTGTTGTGTCAGCGATTTCCTATCATTTGATGAACAACAGGGATCCAGAATACCGAAATGGAAAACTTTTGATATCTTCCAAGAGTTTATCCCATGGATTGAGTATATTCCAGGAAGGAAATAATGAAGGAAAAGACACTCTAAAGCTTGAGACGAATGCAGAATCATCGAAGGAAGCCCAAGGGGACGAAGCTGTTGGGGCAAAGACTGAATCTAAATCTGAAAATCCAGCTGCAGAAAACAGAACTGAGGCAGAAAAATCTGTTCCTATAGTGAAGAAAGATGTTGAGAATGTTCCTCCACAAAAAGCACCTGAAATACCTCCAGACAACGAATTTGAAAAGCGAATAAGACCCGAAGTTATCCCTGCAAATGAAATTGGGGTGACGTTTGCAGACATTGGTTCCTTGGATGAGATCAAAGAGTCCTTACAGGAATTAGTCATGCTTCCTCTTCGACGACCAGACCTCTTTAAAGGCGGGCTTCTTAAACCTTGTAGGGGCATTTTGCTTTTTGGTCCCCCTGGAACGGGTAAAACAATGCTCGCAAAGGCCATTGCTAATGAAGCTGGAGCAAGTTTCATTAATGTTTCGATGTCCACAATCACTTCTAAATGGTTTGGGGAAGATGAAAAGAATGTCCGGGCATTGTTTACACTTGCAGCAAAGGTCTCACCTACAATTATTTTTGTTGATGAAGTTGATAGCATGCTCGGTCAGCGGACTAGAGTGGGAGAGCACGAGGCCATGCGAAAGATTAAAAATGAATTCATGACACACTGGGATGGACTACTGACTAGGAACGATGAGCGAATACTAGTTCTTGCTGCAACCAATAGGCCATTTGACCTCGATGAAGCAATCATTCGGCGATTCGAGCGTAGAATTATGGTTGGTCTTCCATCAGTGGAGAGCAGGGAAATGATCTTGAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTTAAGAATTTGTGTGTGACTGCAGCTTATCGGCCTGTTCGGGAGCTCTTGCAACAGGAGAGATTGAAGGATTTGGAAAAGAAGCAAAGAGAGGAGAAGGCAAAGGCAAAGGCCAAGGAGAAGGAGGAGATGGAGACAGAGACGGCGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAAGAGACAAAGATGGAGAAGGAGGAGACGGGGACAGAGAACGAGAAGGAGAAGGAAACTAATTCGGAAGACGTTACAGCTACGAAAGAGGACGAAAAAGAGGAACAAGTGATCATTCTGAGGCCTTTAAATATGGATGATATGAGGCAGGCAAAAAATCAGGTTGCTGCAAGTTTTGCTTCTGAGGGATCCGTTATGAATGAGTTGAAGCAATGGAATGATTTGTATGGAGAGGGAGGTTCAAGAAAAAAGCAACAGCTTACTTACTTCCTATAG 2649 43.26 MEQKHIFLSALGVGVGVGVGLGLSSGQAVGKWVGGNGSSDEITGQKIEQELIRQLVDGKNSNVTFDEFPYYLSERTRVLLMSAAYVHLKHCDISKHTRNLSPASQAILLLGPTELYHQMLAKALAHHFESKLLLLDVSDFSLKMQSKYGCAKKELSFRRSISEAALERASSLWGSFSILPTSGNTRGNLRRQSSTTDIQSRSSDGSSNPPKLRRNASAASDISSISSNCASTNSASVKRTNSWCFDEKLFLQSLYKVLVTVSETSSIILYLRDVERLLLQSQRLHNLFRRFLDKLSGSVLVLGSRMVDLENDCGDVDDRLTSLFRYSVEIRPPEDENHLVSWKAQLEEDMKMIQFQDNKNHIAEVLAANDLECDDLGSICHADTMVLSNYIEEIVVSAISYHLMNNRDPEYRNGKLLISSKSLSHGLSIFQEGNNEGKDTLKLETNAESSKEAQGDEAVGAKTESKSENPAAENRTEAEKSVPIVKKDVENVPPQKAPEIPPDNEFEKRIRPEVIPANEIGVTFADIGSLDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLEKKQREEKAKAKAKEKEEMETETAKEKEKEKEKEKEETKMEKEETGTENEKEKETNSEDVTATKEDEKEEQVIILRPLNMDDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 971639 979346 - Maker00038731 Lcy12g0068 648131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0068 882 SMART AAA_5 558 695 IPR003593 GO:0016887(InterPro)
Lcy12g0068 882 Pfam AAA+ lid domain 714 758 IPR041569 -
Lcy12g0068 882 Gene3D - 694 778 - -
Lcy12g0068 882 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy12g0068 882 Coils Coil 750 804 - -
Lcy12g0068 882 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 38 881 IPR051701 GO:0005741(PANTHER)
Lcy12g0068 882 MobiDBLite consensus disorder prediction 184 219 - -
Lcy12g0068 882 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 521 696 - -
Lcy12g0068 882 MobiDBLite consensus disorder prediction 764 827 - -
Lcy12g0068 882 MobiDBLite consensus disorder prediction 447 503 - -
Lcy12g0068 882 MobiDBLite consensus disorder prediction 447 486 - -
Lcy12g0068 882 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy12g0068 882 Gene3D - 521 782 IPR027417 -
Lcy12g0068 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 761 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0068 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0068 Lcy-Chr12:971639 Lcy3g1731 Lcy-Chr3:44560582 6.48E-130 dispersed
Lcy12g0068 Lcy-Chr12:971639 Lcy6g0843 Lcy-Chr6:8485601 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75