Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g0094 ATGTTACCGCATGCAGTGAAAGAAGATACAATGTTTGCGAATTATTTCATTCCCAAAAATGGAACAGTGAATATCCTGGCCGTGGAGATGGGGTGGGATCCAGAAGTATGGGAGGATCCGATGGCGTTTAAGCCGGAGAGGTTCGTGAGCGGCGACGGAGAGGCGACATTGATGACGACGACGACGTTTGATGTAACATGTAGCAAGGAGATTCAGATGATGCCGTTTGGAGCAGGGAGGAGGATATGTCCAGGAGCTGGTTTGGCAATGCTTCATTTGGAATATTTTGTTGCAAATTTGGTTTGGCGATTTGAGTGGAAGGCTGTGGAAGGAGATGAAATTGATTTATCAGAGAAGATGGAATTCACCATTGTGATGAAGAAGCCTCTCAAAGCCCATATACATCCAAGTCAGAAAACTGGTGAAAGAGCAAGAGGGGAAGTAGAGAGTTCAGAGAATGAATTTCGGGATCTCATCTTCAGTGACGAAGAGAGAGGTAGCAGAGACCAAGCGGAGGCGACCGAGCTCAGCCCGCGCAAGCGGCTTGGCCCGACCCTTTGGTCTGGTCTTCCTCTGGGTCAGTTTCCTGGTCCTACCTCTGCCCGATTGTCCTCGTCAGCTTCTTGTGAATCGGAATGGTCCAAAATTGCTTATAACAGTGTTTATAAACTTAACTTTTGGAAAAGAAAACCCAAATAA 699 46.92 MLPHAVKEDTMFANYFIPKNGTVNILAVEMGWDPEVWEDPMAFKPERFVSGDGEATLMTTTTFDVTCSKEIQMMPFGAGRRICPGAGLAMLHLEYFVANLVWRFEWKAVEGDEIDLSEKMEFTIVMKKPLKAHIHPSQKTGERARGEVESSENEFRDLIFSDEERGSRDQAEATELSPRKRLGPTLWSGLPLGQFPGPTSARLSSSASCESEWSKIAYNSVYKLNFWKRKPK 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1235391 1236865 - Maker00039050 Lcy12g0094 648157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g0094 232 Gene3D Cytochrome P450 1 147 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0094 232 Pfam Cytochrome P450 2 129 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0094 232 SUPERFAMILY Cytochrome P450 2 136 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0094 232 MobiDBLite consensus disorder prediction 159 184 - -
Lcy12g0094 232 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 76 85 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy12g0094 232 PRINTS E-class P450 group IV signature 67 83 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0094 232 PRINTS E-class P450 group IV signature 31 49 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0094 232 PRINTS E-class P450 group IV signature 83 101 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g0094 232 MobiDBLite consensus disorder prediction 159 176 - -
Lcy12g0094 232 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 1 134 IPR051103 GO:0016020(PANTHER)|GO:0016709(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0094 Lcy-Chr12:1235391 Lcy12g0097 Lcy-Chr12:1258630 5.36E-88 dispersed
Lcy12g0094 Lcy-Chr12:1235391 Lcy12g0096 Lcy-Chr12:1253301 8.11E-87 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g0094 K24184 - csv:101218555 218.009