Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy12g0096 | ATGGTCTCTTTCTTCCTCACTTTTCTTGTGAAGTTATTTCTTTTCCCCTCTCGGCGTGGCCTTTACAAGCTCCCCCCGGGGCCAGCCACATTCCCAATTCTCTCAAACTTCCTATGGCTCCGCCAGTCGCCCCTTGAGTTCGAATCTGCGCTGCGCTGTTTCATTGCCAAATATGGCCCCATCATCACTCTCCACATCGGCCCGTCGCCGACCATCGTCATCTCCGACCGCTCCATCGCCCACAAGGCCCTCGTCCAAAACAGCGCCATCTTCGCCGACCGCCCCCAGTTCCTTGCCATCAACAGGATTGCCACCTCCGGCAGCTGCCTCAACAACATCACTTCCGCCCCTTATGGTTCCACGTGGGTTTTAGACATTCTTGTTACTCGCCTTGTGTCTCGATCTGGATCGGGAGCTTATGTTGTTGTTGAGCATTTTCAGTTTGCTATGTTTTGTTTGTTGGTTTTGATGTGCTTTGGGGACAAGCTGAATGAGACAGAGATCTTGGAAATTCAACAAGTGCAGCGTGAGATTTTGGTAAATCTTCAGCGTTTTGTTATACTCAATTTCTGGCCTAAGTTGATGAAGATTTTGCTTCGAAAGCGTTGGAAGGCTTACTTACAACTCAAAAGCAAGCAAGAAAAGGTCCTAATCCCATTTATCAAGGCACGAGAGAAGGCAAAACAAGAAACATCAAAAAAAGATGGAGAAGAAAAAGAAGAATTTGTAGTATCATATGTGGATACTCTGCTCGATTTGCACCTTATCGATGAAAATAGAAAGCTTAAAAATGAAGAAATGGTGAGTTTATGCTCGGAGTTCCTCAACGCCGGGACTGACACCACTGCCACAACTTTGCAATGGATAATGGCAAATTTAGTAAAGTACCCACACATCCAACAAAAACTATTCCAAGAGATCAAACGAGTCATGGAATCCAACACAAAACAACATGGGTTACGGGAGGAGGAGGTAAAGGAAGAAGATTTGGGGAAGCTTCCATATTTGAAAGCCGTGGTTCTAGAAGGATTACGAAGGCACCCGCCGGGACATTTCATGTTACCACATGCCGTGAAAGAAGATACGATGTTGGAGAATTATTTCATTCCCAAAAATGGAACGGTGAATATCTTGGCCGTGGAGATGGGGTGGGATCCGGAAGTATGGGAGGATCCGATGGCGTTTAAGCCAGAGAGATTCGTGAGCAGCGATGGAGAGGCGACGACGATGACGTTTGATGTGACATGTAGCAAGGAGATCAAGATGATGCCGTTTGGAGCAGGGAGGAGGATATGTCCAGGGGCTGGTTTGGCAATGCTTCATTTGGAATATTTTGTTGCAAATTTGGTTTGGCGATTTGAGTGGAAGGCTGTGGAAGGAGATGAGATTGATTTATCAGAGAAGATGGAATTCACCATTGTGATGAAGAACCCTCTCAAAGCCCATATACATCCAAGGTTTTAG | 1464 | 46.17 | MVSFFLTFLVKLFLFPSRRGLYKLPPGPATFPILSNFLWLRQSPLEFESALRCFIAKYGPIITLHIGPSPTIVISDRSIAHKALVQNSAIFADRPQFLAINRIATSGSCLNNITSAPYGSTWVLDILVTRLVSRSGSGAYVVVEHFQFAMFCLLVLMCFGDKLNETEILEIQQVQREILVNLQRFVILNFWPKLMKILLRKRWKAYLQLKSKQEKVLIPFIKAREKAKQETSKKDGEEKEEFVVSYVDTLLDLHLIDENRKLKNEEMVSLCSEFLNAGTDTTATTLQWIMANLVKYPHIQQKLFQEIKRVMESNTKQHGLREEEVKEEDLGKLPYLKAVVLEGLRRHPPGHFMLPHAVKEDTMLENYFIPKNGTVNILAVEMGWDPEVWEDPMAFKPERFVSSDGEATTMTFDVTCSKEIKMMPFGAGRRICPGAGLAMLHLEYFVANLVWRFEWKAVEGDEIDLSEKMEFTIVMKNPLKAHIHPRF | 487 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1253301 | 1255768 | - | Maker00038767 | Lcy12g0096 | 648159 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy12g0096 | 487 | PRINTS | E-class P450 group I signature | 79 | 100 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | PRINTS | E-class P450 group I signature | 286 | 312 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | PRINTS | E-class P450 group I signature | 432 | 455 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | PRINTS | E-class P450 group I signature | 266 | 283 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | PRINTS | E-class P450 group I signature | 422 | 432 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | PRINTS | E-class P450 group I signature | 337 | 355 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | PRINTS | E-class P450 group I signature | 378 | 402 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | PRINTS | E-class P450 group I signature | 55 | 74 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | FunFam | Cytochrome P450 family protein | 120 | 487 | - | - | |
| Lcy12g0096 | 487 | PRINTS | P450 superfamily signature | 277 | 294 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | PRINTS | P450 superfamily signature | 432 | 443 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | PRINTS | P450 superfamily signature | 338 | 349 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | PRINTS | P450 superfamily signature | 423 | 432 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 425 | 434 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy12g0096 | 487 | SUPERFAMILY | Cytochrome P450 | 25 | 486 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 8 | 485 | IPR051103 | GO:0016020(PANTHER)|GO:0016709(PANTHER) | |
| Lcy12g0096 | 487 | Pfam | Cytochrome P450 | 25 | 97 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | Pfam | Cytochrome P450 | 125 | 478 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g0096 | 487 | CDD | CYP77_89 | 57 | 480 | - | - | |
| Lcy12g0096 | 487 | Gene3D | Cytochrome P450 | 18 | 487 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g0096 | Lcy-Chr12:1253301 | Lcy8g0973 | Lcy-Chr8:34339365 | 1.71E-216 | dispersed | |
| Lcy12g0094 | Lcy-Chr12:1235391 | Lcy12g0096 | Lcy-Chr12:1253301 | 8.11E-87 | proximal | |
| Lcy12g0095 | Lcy-Chr12:1238271 | Lcy12g0096 | Lcy-Chr12:1253301 | 3.98E-105 | tandem | |
| Lcy12g0096 | Lcy-Chr12:1253301 | Lcy12g0097 | Lcy-Chr12:1258630 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy12g0096 | K24184 | - | csv:101218555 | 746.888 |